| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2623 |
|---|
| Symbol | |
|---|
| ID | 5663016 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 3193062 |
|---|
| End bp | 3194048 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 641237261 |
|---|
| Product | patatin |
|---|
| Protein accession | YP_001502478 |
|---|
| Protein GI | 157962444 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0385483 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTCTACAA AGAAACATTC GGTACGAATT GGCCTAGCGT TAGGTAGCGG AGCTGCAAAA
GGTTGGGCGC ATATTGGTGT ATTAAACGGC CTTGCCAAAA TGGGGATCTA TCCCGATAAA
ATTGCAGGCT GCTCTATTGG TGCATTAGTT GGCGCGGCTT ACGCTAATGA TCATCTAGAA
GAACTTGAGA ATTGGGTTCG TAGTTTTAGC AGCTGGGATG TACTTGGGCT GATGGATCTA
AGCTGGGGGC GTGGCGGATT AATTGGCGGC GAGCGAGTGT TCGACGTCCT GCAAAAGCGC
ATTGGCGATA TGCAGATAGA AGATTTGAAA AAGCCATTCG CAGCCGTTGC TACTGACCTT
TATTCTGGTC AGGAAATTTG GTTCAGAGAA GGGGATTTAC GTCATGCTGT GCGCGCGTCT
TGCTCCATGC CTGGCATTTT ACCCCCGGTT AAAGTGGGAG AGCGTTGGTT GGTCGACGGT
GCGGTAGTTA ACCCTGTTCC GGTTTCAGTT AGCCGTTCTA TGGGAGTCGA TTTAGTCATC
GCGGTTGATC TACATGGGCT GCGTCGTGGT CGCATGCAAG TACTGCCAGT CAGTATGAAG
AGCCATAAGC CAACTAAGCA AGAAGTCCAA GAAGCGGAGC AGCATCAAGA TAAAGGCTTT
ACCGATTTGT TAGCTAGGGG CCGAGATTAT ATTACAGGCT TAACGGATAA ATTCTCTTTA
GGCCATAAAA CGGGCACGGC GCAAAATCCA AATCCTGGCA TGCTTGCAGT GATGTCACAG
TCGATGGATA TTCTAGAACA GCGCCATAAG AGAGCGCGTT TAATGGGCGA TCCACCGGAT
ATCTGCATTG TGCCTGATCT GGGCGATATC GGAACCATGG AGTTTCATCG TGCAGAAGAA
GCGATTCAAG CGGGTGAAGC CGCGGTTGAA CAAGTCGCGC ATCTTATTGA GGCGGCTCTG
GCACAGCATT CTGCTGAGAG AGCTTAA
|
|---|
| Protein sequence | MSTKKHSVRI GLALGSGAAK GWAHIGVLNG LAKMGIYPDK IAGCSIGALV GAAYANDHLE
ELENWVRSFS SWDVLGLMDL SWGRGGLIGG ERVFDVLQKR IGDMQIEDLK KPFAAVATDL
YSGQEIWFRE GDLRHAVRAS CSMPGILPPV KVGERWLVDG AVVNPVPVSV SRSMGVDLVI
AVDLHGLRRG RMQVLPVSMK SHKPTKQEVQ EAEQHQDKGF TDLLARGRDY ITGLTDKFSL
GHKTGTAQNP NPGMLAVMSQ SMDILEQRHK RARLMGDPPD ICIVPDLGDI GTMEFHRAEE
AIQAGEAAVE QVAHLIEAAL AQHSAERA
|
|---|
| |