| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2593 |
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| Symbol | |
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| ID | 5662986 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 3158031 |
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| End bp | 3162341 |
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| Gene Length | 4311 bp |
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| Protein Length | 1436 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 641237231 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001502448 |
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| Protein GI | 157962414 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGGCTA ATAATCAAAC AGAAAATATG CCTAGAATTC TTATAAAAAT CGCGACTTTT
CTACTCTTTT GCATTTCTAT GGCAAATTCT GCCTATGCAT TAACCTTAAA CTCTACTTCT
TTAGGCGTTC AAGATGGTTT ATCACAAAGC AATGTGACCT CCATTGTCGA AGATGCCGAT
GGTTATATCT GGATAGGAAC AGTCAATGGC CTTAATCGAT ATGACGGTAA AGAGTTTCGC
CATTACTTCC CATCCAAAGA GAATGAACTC CCAAGTGCAT TCATTCGTAG TCTATTTATC
AGCGATACGG GTGTAATGTA CATAGGTACT GATAAAGGTC TAGCTGTTTA TGATTCATTA
ACCGATAGAG TGATCTCAAT AAAGTCAGGC GACTTTCTTA AAGAACAAGC TATTTGGTCA
ATATCTGATA ATGGAAATGA AATTATTATT GGGGCAGAGA ATGCAGTTTA TATAACACAA
GAAAATTCAA AAGAAGCTGT TCTTGAATTA TTAAACTCCT ACAGTGGCGA TTATAATGGA
GTAAAGCAAG CAATTCATTT CAAGAATGAA ATATACATAA GGAATTATAT AGGCGAAGTT
AAATCAATAC AAAACACCCA TGAACTTTAC TTCCAAAAAG CTACAGCAAT AAAAGAAATC
AACAATAAAC TAGTCGTGTT CACAACCGAC GGTATATATG AGATGGCAAA CGCGTCATTC
TCAAAAAAAA ATAACGATTC ATTTATAAGC GTTTCCTCTG GAGATGGGCA TTTCGCATTA
AAAGAAAGTG CCATCTATGA TATATCGAAA CTTACAAGCC CTTTATTAAT CGGAACCCCA
TCTCTATCAG AAAGAGAACT AAACCTGTCA AGGATAAATA TTTTTAGAGG GTTAAATAAA
ACCTTCATAG CACATCAAAA TGAAGGGGTA ATTATAATAG ATGATAATTA TAATCTCATC
CAAAGTATTA CTAACAACAT TGGCAACGTA TGGTCTATAT CTGAAGACGA CGAAAATAAA
ATTTTAGTAA CTACTGAGGA TAGTAAACTA AAACTGTATA ACTTAGAATT TGAACTAATT
AAAGAATATG AAACTGGACT ATATGGAAAC AAATCAGCTT TAACGGTTGA TAACAATATA
TACATTGCCA GCGATCTAGG CCTTTTTTCT ATCAATAAAC AGACTGAAGT CTTATCCAGT
GTGAACCAAG GTTCATACTT CCTGTTAGAG AAATTAAACG ATGGTAAGAC CATAGTTGCT
GGTTCATCAA ATGGATCCAT ATTAAAATAT AACACTCTAG ACAAATCATC TAAGAACATT
AGAATTGACA GAGTAAACCC TATATTTGAC ATTCAAGAAC TAAATAACTC TTTGTATGTT
GGTACGCAAA GCGGCCTATA TAAAGTTGAA AACAACAAAA CAAAAATAAT ATATGACGAA
AACTTTGTAA CAAGCATTAC AAAATCTGGT AGTTCACTAT ACTTCGGAAC AAGCACTGGG
ATAAAAAAGT ACTCAACAAC GAGAAACAGC ATTGAAGATG TTTACTCCAA CAAAAAACCG
ATATTTTCTT TAGCCATAAA TAATCAACAG TTATACGCAT CATCGATAAA TGAAGTGATC
ATTCATAACT TCAAAAACAC TTCAACTTCA ATACTAACTA ATGAGTTAGG AGCGCAAGAA
GAATACAATT TACAATCTAT CCTAGACAAT GATAGTGAAG TTTATATTGG TGGTATTTCC
GGAGTCAGTA GAATAATCAC TAAAGAATTG AATTCTTTTT TAGAACGCAA CACTCCGCCT
ATAACCGAAC TAACAGAACT TTCGATCTTT AATATTATCG AAGAACCAAA TGGCTCCGTA
CTAAAAAATC AATTATCTCA GACAGATAAA ATAAAGTTGA AATATTCTGA CTACCCCTTC
ACTCTATCTT TTAGCAGCCC AGGCAGCTCT TTTAAACATA TTAACTATGT ATATCAAATG
CAGGGACTTT CGGAATCTCA GATCCAATCA AAAGGCACAA ATTCGGCAAC CTATACCAAT
TTGTCTCCAG GGGATTATAT TTTTTCCATC TATGCAATAG ACCCTGTTAC GGGTAAGAAA
GGACAAATTC GTGAGTTAAA TATTGAGATC ACACCACCTT GGTGGTTATC AATCACGGCG
AAGTTTATCT ATCTACTCTG TTTCATATTC ATCTCTATCT TAATTATCAA AACCATACTA
CGTCGGCGTG AAATTCAAAG ACAGATAGCC AAGAGTGAGG AGCGCCTTAA GCTTTCTCTT
TGGGGAAGTG GCGATGAAAT GTGGGACTGG GACATTGAAA CAGGCCAAAT TTACCGCTCA
AATATCTGGG GCTCCCTAGA GTTCCCTCAA GATGGACAGC GTTCAGGTAA TAATGGGGAA
GAGAGTAACA TCCACCCAAT GGATCAGGAG CGTGTCCGCG AAGCATTAAA TAAACATTTT
TACGGTGAAA CCGATCACTT TGAAGCGGCC TATCGAGTCA AAGGCAAATC AAACGACTGG
GTTTGGATCT TAGATAGAGC GAAAATTGTT GAACGTGATG AAAACGATAA TGCGCTCAGA
ATGACAGGAA CCATCAAAAA CATCAGCAAC TTTAAGCAAG CCGAAGAACA ATTAAGATTG
TTTGAACGGG CCATTCAGAA TATTTCTGAA GGTATGTTTA TTCTCGATAG AAACTTTAAG
TTTGTAGAAG TGAATGAAGC ATGCTGCGAC TTATCTATGA TGAGTAAGAA TGAGCTCATT
GGCACCCTAT TTAATTTTGA TCTCTATCCA GATAGCTATT CAGAGCAGAT CCGTTCAATA
CTTAAGCAAC AAGGCCGTTG GAACAATGAA GTCGAATCAA TAAGAGGCAA CGGCAGCAGC
TTTTTAATGG AGCTCTCCGT CGATGCTATT TATGATGAGC AAGGCGAACT ATCACATTTT
GTAGGTGTAT TCTCCGATGT CAGTCGCCGT AAACAACAAG AAGAAGAGCT TAGAAAACTC
ACAAACAACG ATCTGCTAAC TAACTTACCT AACCGTTCTA ATTTGATGGT AACCCTTGGC
AACCTAGTCA AGAGAGACTC TCACCATACT CTGATGGTTT TAGATTTAGA TAATTTTAAG
AAAATTAATG ATTCATTAGG GCATCAAGCC GGAGATGAAC TTTTAGTACA AGTGTCAGAA
CGTATTCAAG TCGCCGTACC TAGTCATACC AGTATCTATC GCTTAGGTGG AGATGAGTTT
GCAATATTAG TTGATAAAAA TCCTGATATC GGGACTAGCG CCATAATTGC CAAAAACGTT
ATTCACGCCT TCGAAGCCTC TTTTGAACTA AGCAGTGAAA AAGTCGTCGT TGGTTTAAGT
ATTGGTATTG TGTTGTATCC AGAAGATGAT CAAAACGAGC AGGCGCTCCT AAGAAAGGCA
GATATCGCTA TGTATCATGC TAAATCAGCA GGTGGTAACC GTTATCAATT CTACTCTGAA
TCCTTGAACA AAAATGCCAT TCGCCAGTTA GAAGTTGAAA ACCTGATTAG AGATGGCCTT
AAAGACGATC TATTTGAAGT CTATTATCAG CCTAAAGTCG ATTTAAAAAC TGGCCATATG
GCGGGAATGG AAGCCTTAGT GCGCTTAAAT CACCCAGAGC TAGGTTTAAT CGCACCTAAT
GAATTTATCC CATTAGCAGA AGAGAATGGC TTGATTGTCG AAATTGGCGA TGTAGTACTC
AAGAAAGCCT GCTTCGCGGC GCAAAAGTGG CGCTCACAAG GCTTGTTCAA CGGACGAGTC
GCTGTCAATT TATCGTCGAA ACAGTTCGCA TTACCTGATT TACAGCAGCG AGTCGAGTCA
ATTTTACGTC TAACTCAATT ACCCGCCGCT AATTTAGAGC TCGAAATAAC CGAAGGTACG
GTTATTAAAG AGCCTGAAAA AGCAATCAAA GTGATGCAGC AATTATCTAA AATGGGCGTT
AGTTTAGCCC TCGACGATTT TGGTACCGGT TACTCATCAC TTTCTTATTT AAAGCGCTTT
CCTATCCACA CTTTAAAAAT TGACAAGGCT TTTGTTGATG ATATTGACAA GTCTGATCGC
GATCTAAAAA TGGTCGACTC TATTATCACT ATTGCCCACA ATATGGGGCT CTCAGTGGTT
GGTGAAGGTG TTGAAGATGC CTCTCAGCTC AGTATATTGC GCGCCTTAAA ATGTGAAGAG
ATCCAAGGCT ATATCTTCAG CAAGCCTGTG ACTGAATCCA AATTTACCCT GCTACTTCAG
CAAGACTCGA ATAACCAACC AATGACAGCA CTCCCCGCAA AAAGAGGTTA A
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| Protein sequence | MLANNQTENM PRILIKIATF LLFCISMANS AYALTLNSTS LGVQDGLSQS NVTSIVEDAD
GYIWIGTVNG LNRYDGKEFR HYFPSKENEL PSAFIRSLFI SDTGVMYIGT DKGLAVYDSL
TDRVISIKSG DFLKEQAIWS ISDNGNEIII GAENAVYITQ ENSKEAVLEL LNSYSGDYNG
VKQAIHFKNE IYIRNYIGEV KSIQNTHELY FQKATAIKEI NNKLVVFTTD GIYEMANASF
SKKNNDSFIS VSSGDGHFAL KESAIYDISK LTSPLLIGTP SLSERELNLS RINIFRGLNK
TFIAHQNEGV IIIDDNYNLI QSITNNIGNV WSISEDDENK ILVTTEDSKL KLYNLEFELI
KEYETGLYGN KSALTVDNNI YIASDLGLFS INKQTEVLSS VNQGSYFLLE KLNDGKTIVA
GSSNGSILKY NTLDKSSKNI RIDRVNPIFD IQELNNSLYV GTQSGLYKVE NNKTKIIYDE
NFVTSITKSG SSLYFGTSTG IKKYSTTRNS IEDVYSNKKP IFSLAINNQQ LYASSINEVI
IHNFKNTSTS ILTNELGAQE EYNLQSILDN DSEVYIGGIS GVSRIITKEL NSFLERNTPP
ITELTELSIF NIIEEPNGSV LKNQLSQTDK IKLKYSDYPF TLSFSSPGSS FKHINYVYQM
QGLSESQIQS KGTNSATYTN LSPGDYIFSI YAIDPVTGKK GQIRELNIEI TPPWWLSITA
KFIYLLCFIF ISILIIKTIL RRREIQRQIA KSEERLKLSL WGSGDEMWDW DIETGQIYRS
NIWGSLEFPQ DGQRSGNNGE ESNIHPMDQE RVREALNKHF YGETDHFEAA YRVKGKSNDW
VWILDRAKIV ERDENDNALR MTGTIKNISN FKQAEEQLRL FERAIQNISE GMFILDRNFK
FVEVNEACCD LSMMSKNELI GTLFNFDLYP DSYSEQIRSI LKQQGRWNNE VESIRGNGSS
FLMELSVDAI YDEQGELSHF VGVFSDVSRR KQQEEELRKL TNNDLLTNLP NRSNLMVTLG
NLVKRDSHHT LMVLDLDNFK KINDSLGHQA GDELLVQVSE RIQVAVPSHT SIYRLGGDEF
AILVDKNPDI GTSAIIAKNV IHAFEASFEL SSEKVVVGLS IGIVLYPEDD QNEQALLRKA
DIAMYHAKSA GGNRYQFYSE SLNKNAIRQL EVENLIRDGL KDDLFEVYYQ PKVDLKTGHM
AGMEALVRLN HPELGLIAPN EFIPLAEENG LIVEIGDVVL KKACFAAQKW RSQGLFNGRV
AVNLSSKQFA LPDLQQRVES ILRLTQLPAA NLELEITEGT VIKEPEKAIK VMQQLSKMGV
SLALDDFGTG YSSLSYLKRF PIHTLKIDKA FVDDIDKSDR DLKMVDSIIT IAHNMGLSVV
GEGVEDASQL SILRALKCEE IQGYIFSKPV TESKFTLLLQ QDSNNQPMTA LPAKRG
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