| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2576 |
|---|
| Symbol | upp |
|---|
| ID | 5662969 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 3135588 |
|---|
| End bp | 3136214 |
|---|
| Gene Length | 627 bp |
|---|
| Protein Length | 208 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641237214 |
|---|
| Product | uracil phosphoribosyltransferase |
|---|
| Protein accession | YP_001502431 |
|---|
| Protein GI | 157962397 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0035] Uracil phosphoribosyltransferase |
|---|
| TIGRFAM ID | [TIGR01091] uracil phosphoribosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0000104252 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTCG TTGAAGTTAA ACATCCTTTA GTCCGTCATA AAATTGGATT AATGCGCGAA
GGTAACATCA GTACCAAACG TTTTCGCGAA TTAGCGGCAG AAGTGGGCAG TTTACTGACT
TATGAAGCGA CGGCTGACTT TGAAACTGAA AAGGTAACGA TTGATGGTTG GAATGGTCCT
GTTGAAATTG AACAGATCAA AGGTAAGAAG GTAACAGTAG TACCAATCTT ACGTGCGGGT
CTTGGCATGA TGGATGGCGT TCTTGAGCAC GTACCAAGTG CGCGTATCTC TGTTGTGGGT
ATTTACCGTG ACGAAGAGAC ACTTGAGCCA GTGCCTTACT TTGAAAAGCT AGCCAGTGAC
ATGCCTTCAC GTATTGCCTT GGTTGTAGAT CCAATGCTTG CGACTGGCGG CTCGATGATT
TCAACTATCG ACCTACTAAA AGAGCGCGGT TGTACTGCTA TTAAAGCACT TGTGCTTGTA
GCGGCTCCAG AAGGTGTTGC TGCTCTAGAG AAAGCTCATC CAGATATCGA GCTTTATACT
GCGTCAATCG ATGACTGCCT AAATGAGCAA GGTTATATCC TGCCAGGTCT TGGTGATGCG
GGTGATAAGA TTTTTGGTAC TAAATAA
|
|---|
| Protein sequence | MKVVEVKHPL VRHKIGLMRE GNISTKRFRE LAAEVGSLLT YEATADFETE KVTIDGWNGP
VEIEQIKGKK VTVVPILRAG LGMMDGVLEH VPSARISVVG IYRDEETLEP VPYFEKLASD
MPSRIALVVD PMLATGGSMI STIDLLKERG CTAIKALVLV AAPEGVAALE KAHPDIELYT
ASIDDCLNEQ GYILPGLGDA GDKIFGTK
|
|---|
| |