| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2564 |
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| Symbol | tolB |
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| ID | 5662957 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 3123349 |
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| End bp | 3124671 |
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| Gene Length | 1323 bp |
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| Protein Length | 440 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641237202 |
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| Product | translocation protein TolB |
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| Protein accession | YP_001502419 |
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| Protein GI | 157962385 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00000866572 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAAAATT TGGGAAAATG GTTACTGACA AGTCTGCTTA TCTGCAGCAT GCCAGTAAAG
GCCGCATTGG ATATTATTAT TACCGAAGGG GTTGATGCAG CGAGACCCAT CGCGGTTATC
CCATTTGTTT GGCAAGGCAC TGGTCCTATG CCATCGCAGA TCTCCGATGT GGTGATGTCA
GACTTAGCGC GAAGTGGCAC GTTTAGCCCA GCCGATGAGT TAAGCCTGCC ACAACGCGGT
ATAAGCACTT TGGCACAGTT TAATGCATCG GCTTGGATGG CGCAGCCAGC AGAGGCTGTG
GTTATGGGTT CGATTAAGCC TTATGGTGGC GATAAGTATT TAGTGAGTTT TGAGCTCATC
GACTTAGTTA AAGCCCAGCT TCAATCTGAT TCTATGTCGA CTAAAGATTT AGTGATTGAT
AGTCGTGAAA CAGTGATCAG TGCGGCGCAG TTTCGTCAGT ACGGTCACCG GATCAGTGAT
GTAGTGTATG AGAAGCTGAC GGGTATTCGT GGGGCATTCT TGACTCGCGT TGCTTACGTT
GTGGTTAATC ACGGTGAAAA ATCTCCTTAT AAACTGATGA TTGCCGATTA TGATGGTTAT
AACGAGCAGA TGTTGTTACG CTCCCCAGAG CCATTGATGT CACCATCTTG GTCTCCAGAC
GGACAGAGCC TAGCTTATGT TAGCTTTGAG AACCGTAAAG CGGAGGTGTT TGTACAGAAC
ATCTATACTC AGCAACGCAC TAAGATAACC AGCTTCGATG GTATTAATGG TGCGCCGGTA
TTTTCACCGG ACGGTAAGAA GTTGGCGGTA ACACTTTCGA AGGACGGTCA GCCTGAAGTA
TATGTAGTGG ATATTGCGAC TAAGGCGATT AAGCGAGTGA CGAATCATTA CGCTATCGAC
ACTGAGCCGT CTTGGTTCCC TGACGGAAAG TCACTGCTTA TTACCTCTGA GCGTGGTGGG
CGGCCACAGT TATATCGCGT CTTCCTGGAT TCGGGAAAAA TTTCTCGTTT AACGTTTGAA
GGTGAATGGA ACCTAGGAGG TTCAATTTCG CCTGATGGAC GCAGTATTAT TTTTGTTAAT
CGCATCAATG GTAAATTTAA TATCGCTCGC ATGGATCTTG AGACTCGTTT CATGCAAGTC
CTGACCAGTA CGCGATTAGA TGAATCTCCA AGCGTGGCGC CAAATGGCAC CATGGTTATT
TATGGAACAA CATACCAAGG GAAGCAGGTA TTAGCTGCGG TTTCTATGGA TGGACGTTTT
AAAGCAAGAC TGCCAGCTGG GCAGGGTGAA GTTAAATCAC CATCTTGGTC ACCATTTCTC
TAA
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| Protein sequence | MKNLGKWLLT SLLICSMPVK AALDIIITEG VDAARPIAVI PFVWQGTGPM PSQISDVVMS
DLARSGTFSP ADELSLPQRG ISTLAQFNAS AWMAQPAEAV VMGSIKPYGG DKYLVSFELI
DLVKAQLQSD SMSTKDLVID SRETVISAAQ FRQYGHRISD VVYEKLTGIR GAFLTRVAYV
VVNHGEKSPY KLMIADYDGY NEQMLLRSPE PLMSPSWSPD GQSLAYVSFE NRKAEVFVQN
IYTQQRTKIT SFDGINGAPV FSPDGKKLAV TLSKDGQPEV YVVDIATKAI KRVTNHYAID
TEPSWFPDGK SLLITSERGG RPQLYRVFLD SGKISRLTFE GEWNLGGSIS PDGRSIIFVN
RINGKFNIAR MDLETRFMQV LTSTRLDESP SVAPNGTMVI YGTTYQGKQV LAAVSMDGRF
KARLPAGQGE VKSPSWSPFL
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