Gene Spea_2563 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_2563 
Symbol 
ID5662956 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand- 
Start bp3122785 
End bp3123324 
Gene Length540 bp 
Protein Length179 aa 
Translation table11 
GC content44% 
IMG OID641237201 
Productpeptidoglycan-associated lipoprotein 
Protein accessionYP_001502418 
Protein GI157962384 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins 
TIGRFAM ID[TIGR02802] peptidoglycan-associated lipoprotein 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.0000000637753 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATCTGA ATAAGCTATT TAAAGCCATG TTAGTCGTAC TTCCTATTAT GGCTATCAGC 
GCCTGTAGCT CAACTTCTGA GTCTGAAACG GATGCAACGA GCTCTACTGA GTCGTCTTCA 
TCGAGTGAAT ATGCTAACAA TGGCGTTGAA ACAGGAGGTG TTGCACCTGT ATTGACTCCA 
CAGGAGCAGC AACGCCTTAA GTATCAAGAG TTGAGAAAAG AACACATCAT CTATTTTGAT 
TTTGATCGTA GCTCGGTTTC TCAACAGTTC GCTGAGATTT TGGATGCTCA TGGTGACTAT 
CTTGTTGAGC ACCCAAATGT TCGAGTGATG ATTGAAGGTC ATGCTGATGA GCGTGGTACA 
CCAGAATATA ATATTGCACT AGGTGAGCGC CGCGCGAAAG CCGTTGCAAA ATACCTACAA 
GGCATGGGTG TTCAACCAAG CCAAATGAGC ATCGTGAGTT ATGGTGAAGA GAAACCACTG 
GATTTTTCTC GCTCAGATGA TGGTTTTGCT AAAAACCGTC GTGCAGTACT CGTTTATTAA
 
Protein sequence
MDLNKLFKAM LVVLPIMAIS ACSSTSESET DATSSTESSS SSEYANNGVE TGGVAPVLTP 
QEQQRLKYQE LRKEHIIYFD FDRSSVSQQF AEILDAHGDY LVEHPNVRVM IEGHADERGT 
PEYNIALGER RAKAVAKYLQ GMGVQPSQMS IVSYGEEKPL DFSRSDDGFA KNRRAVLVY