| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2501 |
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| Symbol | |
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| ID | 5662894 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 3045885 |
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| End bp | 3047243 |
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| Gene Length | 1359 bp |
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| Protein Length | 452 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641237127 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001502356 |
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| Protein GI | 157962322 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.460244 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACCAACA TAGAACAAGC GCTCGCCCTA CTCGCTGCAC CTTATACAGA TGAACACTTC
TTTGCTCGCG CCCTAAAGGC GTTAACCTTA GTGACCGGTT GCCGCTGGGC AGGATTTGGC
CGCCCTTCCG CTCAGGAGGG ATACGGTGAA ATAATTGCTT TTTTCGATGG TAATGAAAAT
TTACCTAGTT TTGAATTTGA ACTAAAAGGT TCCCCTTGCG AGCAGGTTTA CCAGAACAAT
CAATGCCACT TGATCTTTAA CAGCGACCTT CAGAAGCTCT TTCCCAATTT TGATTTGATA
AAAACACTTG GCGCAGACAG TTATCAAGCA GAGCAAATAT TAAACGAAAA GGGAGGAATG
ATCGGCCATA TCTTCGTACT TGATCCGAAA CCGCAAAAAG AAGACTGTAA ATCAAATGAG
TTTTTCAGAC TCGTTGCCCA GCGAATTGGG GTTGAATATC AGCGGCATAT CATTACTCAA
GAACTTGAGC AGCGACAGAA GATGATCGCT TTATCAGAGC AGTATATGTC ATTTGTCGAT
ACCGACTATA TTTACCGTGT TGTATCGAAA GGCTATGAGT CACTATTTAA CTTAACTCAA
GAGCAGATCA TCGGAAAGAG TGTTTTCGAA CTACATGGCA GAAACGTATT TGAAAATCAA
ATAAAACCGC TACTCGATCG TTGCTTTCGA GGAGAACAGA TAAAAACTCA AATTTGGGTC
CACCCACCTA ACCATAAAAG GCCGATTTTC TTAGATGTTC ACCATAATCC TTACTTCGAT
GCCTACGGTC AAATACAGGG TTCTATCGTT TCGGCTCATA ATATTACTGA GCTTGAACAA
GCTAAGAGCA GAATAGAGTA TATAGCAAAT CACGATAGCC TAACGGGGCT AGCCAACAGG
CGCTCGTTAT TTTACCAATT CGAGAAGTTA CTTAAAGTGG AAGAAAATGC TAGCCCAACT
GTCGCCATCG CCTATTTAGA TATTGACCAT TTTAAATCAA TTAACGACAA CTATGGCCAC
CAAATTGGCG ACCTAGTGCT CATCGAAGTG GCTGAAATAT TAACTCGTGC GAGCTTACAA
GGTGATACTG TTGCCCGAAT TGGTGGGGAC GAATTTATTT TAATCAAAAC TTTTGAGCAA
CAGCTCGCCA CATTAAATGG ACAAGTCTTG CTCGATAATC TGCGAATACA ACTGCAACAT
GCATTGTGTA CTCAGGTTTC AATTGGTGGT CACAAGATAA AAATTAGCGC AAGTATCGGA
CTTCACTTAG TCGATGACAC ATCTGCGGAA TTAGCTTCAC TCATAAATCA GGCCGATAAT
GAAATGTTTA AATACAAACA AGGCGCACCC GGTCGCTAA
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| Protein sequence | MTNIEQALAL LAAPYTDEHF FARALKALTL VTGCRWAGFG RPSAQEGYGE IIAFFDGNEN
LPSFEFELKG SPCEQVYQNN QCHLIFNSDL QKLFPNFDLI KTLGADSYQA EQILNEKGGM
IGHIFVLDPK PQKEDCKSNE FFRLVAQRIG VEYQRHIITQ ELEQRQKMIA LSEQYMSFVD
TDYIYRVVSK GYESLFNLTQ EQIIGKSVFE LHGRNVFENQ IKPLLDRCFR GEQIKTQIWV
HPPNHKRPIF LDVHHNPYFD AYGQIQGSIV SAHNITELEQ AKSRIEYIAN HDSLTGLANR
RSLFYQFEKL LKVEENASPT VAIAYLDIDH FKSINDNYGH QIGDLVLIEV AEILTRASLQ
GDTVARIGGD EFILIKTFEQ QLATLNGQVL LDNLRIQLQH ALCTQVSIGG HKIKISASIG
LHLVDDTSAE LASLINQADN EMFKYKQGAP GR
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