Gene Spea_2419 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_2419 
Symbol 
ID5662812 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand
Start bp2951072 
End bp2954881 
Gene Length3810 bp 
Protein Length1269 aa 
Translation table11 
GC content48% 
IMG OID641237045 
Productexodeoxyribonuclease V, gamma subunit 
Protein accessionYP_001502274 
Protein GI157962240 
COG category[L] Replication, recombination and repair 
COG ID[COG1330] Exonuclease V gamma subunit 
TIGRFAM ID[TIGR01450] exodeoxyribonuclease V, gamma subunit 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTATATC TAGTGCAATC AAACCAAATG GAAGCGTTAT CTAAGCTTTT AGCTAATGAA 
TTACGCACGC CATTGCCTAA CAGCCCATTA TTAATGCCAG AGCATATTTT GGTGCAGAGT
CCGGGCATGT CTACCTGGTT AAGATTAGAG ATAGCAAGAC AAAATAACAT CGCTGCCGGC
CTTGAGTTTC CACTGCCATC AAGTTTCATC TGGCAGTTGT GTCATACCCT ATTAGAAGAT
GTGCCTAAAG AGAACGCCTT CACTAAGGCG GCAATGACTT GGAAGCTGAT GGAGCTGCTG
CCCACACTTA TCGACGATGA AGATTTTGCC CCACTGGCAA ATTACCTCAA CAATGGTAAC
GCTAGCCAAG AAAGTGTTGT CAAACCCGCT GACTCTGACG ATACCCTAGC TGACTCGTTC
TCATTAAGTG GTGATAGCGA AGAGACACAA GAGAGTGAAG ACCAAGGTGA GAGCGAGCAA
AATCCACTTA AGCTATATCA GCTCTGTGGC CAAATTGCCG ATATTTTCGA CCAATATCTT
GTGTACCGCC CTGATTGGAT CAGCGCCTGG GAGGCGAACG AGCCTACCTT GCCGCCTAAA
GGCGATAAGC TTAGCCCTGC TCAAGCCTGG CAGCCCATTC TCTGGCGCGC GCTCATCGAT
TTTAATGCCA ACACCTTAGG AAAAAGTCGC TATCACCGCG CTAACTTACA CCAAGCACTG
TTTGATGCTC TCGATGATCC TAATACTAGC CTAGAGGCGC TACCTAGGCG CTTATTCGTG
TTTGGGATCT CCTCAATGGC GCCACAAACA CTCGATGTCT TGCATTATTT AGCCAAGCGC
ATCGACGTGA TAATGCTCAA TTTGAGTCCC TGTCAGCACT ATTGGGGGGA TATTGTCGAT
CCGCGTCTGC GCGCACGTAT GGCGCTGCAA TACGCCGATA AACACAAATT GGAAGTAGAA
TGGGAAGATA AACTTGAAGT GGGTAACCCA CTGCTTGCCA ACAATGGCAA GATGGGCCGT
GAGCTGCTCG ACTTGCTGTT AGAGCTGCCC GAGGAGCATA CCGCATTCGA TCTTGATTAC
TATCAAGCGC CTAGTACCCA AACCATGCTA AATGGTGTGC AATATGACAT CTTAGAGCTG
ACCACACGAG GCCAGAGTCT AGGGCCCGAT GCCGCGCTGT ACTTAAGCTT AGATGGAAGA
CGAGTCATTA CTGATTCCGA TGACTCGATC ACGGTTCGCA GCTGTCACAG CCCGCTACGT
GAAGTTGAAA CCCTACACGA CCATCTGCTA GAGATGTTAT CTCGTCCTCT CACAGATGAA
CAACTTGCAA ATGGTGAAAC ACCGCTGGCG CCAAAAGATA TCGTGATCAT GATGCCTGAT
GTCGCGGCTT ATGCTCCCTA TATTGACGCG GTCTTTGGCG CAAAACAGGG CGGTCACTAT
ATTCCCTATG CGATTGCCGA TCGCGGCGCC GCTCAAGAAT CGCCGCTTAT CGCCAGTTTT
CTACACCTAT TAAAAATCAA TCAGAGCCGC TTTGGCCTGA CTGATATTAT CAGCATTTTA
GAGGTCCCAG CGGTGCTTCG CCGTTTCGAA CTCGACGATG AGAGTCTCGC GGTAATAAAG
CGCTGGTTAG ATCAAGCCGG AGTTCGCTGG GGACGAGATG AGACCAGCCG CACTGAGTTT
CAACTGCCCG CATTTGAACA AAACTCTTGG GCCTTTGGTA TTAAACGCTT AATTTTAGGC
TATAGCTTTA GCGATGACGC GCCACTTTAT CAAGAGCGAT TATCGGTGAA TGGCGTAGAG
GGACAAACGG CGCAGGCATT AGGTAAATTG CTCGACTTTA TCGAAGCACT CGATCACGTG
CATCACTCAC TCGCTCAAGT CTGCAGCTTA AGTGAGCGCA TGACGCAGCT CGAAGCTATC
CTCGAAGATT TTTATGAAGT CGACGATGAC GAGATTGTCC AGCGACAAGA GATCCGTGAG
GCCATCGTTA AACTCAACGA GGAGCTTACC GAAGCAGGCC ACACTACGCC TCTAACCATA
GAGGTGATCC AGAATTGGTT TAACAGCCGC TTATCAGAAT CTCGAGTAGG CCAGCGTTAT
CTTGCCGGTA GTGTTAACTT CTGCACCTTG ATGCCTATGC GCTCTATTCC TTTTAAACTT
GTGTGTTTAT TAGGTATGAA CGATGGCGTA TATCCACGTG TTCAGCATCC CGTTGGCTTC
GATCTTGTGG CGCAAATGGG GCCGAGAAAA GGTGACCGCT CGCGTCGATT AGACGACCGA
TATCTGTTTC TTGAGGCTAT CCTATCGGCT CGCGAGCAGC TCTACATCAG CTATATCGGT
AATAGTGAAC GCGATGACTC AGAGCGGATC CCATCTATGT TGGTATCTGA GCTTATTGAG
TATTGTCAGT TGGTTTATCT ACCACATGAT CTTGAACAAC AAGCAAGCAC TCATGAGCTT
GAGGCCGATG GCAACGCATC ACAGCAACTT ATCGAAAAGA TAGAGAAAGG CGTAGCAAAG
CACCTGATCC GCAAGCAGCC TCTACAACCC TTTGATCCGC GACTTTATAG CGCACAAAAC
AGCCTAAAGA GCCAAGATAG TGCCGCTCCT AAACTACAAC AAAGCTACTC CGCTCAGTGG
TGTCCGCAGG GCGCTCAGTC AAGCGATACC TTTACGGCAT TTCGCAACAG CTATAACGGC
TTTATCGGCC ACAACGCTCA ACTACTGCCT TTCAGTGAAA AGGCACATGC TGAAACAATA
GACGGCATAG AAACCGAAGA GCTGGAACTA TCGGCACTGA TCCGTTTCTT TAGAAACCCT
GCACAATACT TTTTTAATCG AAGTTTAAAG GTTGATCTGG GACTGGATAT TCAGGCAGAT
GATAATGACG AGCCCTTCAG CCTCAATGCA CTAGAGCGCT ATAAGCTACA GGCAACACTG
CTAGATAACG CTATCGGCAA CGGTGAAGAG CGACCAGAAC AAGCGCTACT TGAGCGATTA
AAGGCGCAAG GTAACTTACC ATTAAAGCCC TTTGACGACC TGATTTTAAA TCAGTATCTA
CATGATATTA AGCCGCTTAT CGGCCGCTGT TTATACCTAA AAGGCGAAGC TTCTCATTCG
GTTGACATCG ACCTGTTATT CGATGAAACA GATGTTGACC TTGATGATAA CAGTAATAAC
GAACTTGATA ATCGTTTAGC CCTGAACCTT GTTGGCCGTA TCGATGACTT AAGTGCAAAA
GGCTTGGTTA ACTACCGCCC CGGCACCGCC AATGGCCGGG ATTTAATTCG TGTCTATTTA
CGTCACCTTT GTCTATGCGC CATGGGAAGC CGCACCCAAG TTCAGGCGCA AAGTGACTCA
GTCGTAGCAA ACACCAACAT GGTCAGTTAT CTGCTCGATA TTGGCCATTT CCATGCCTAT
GCGCCAATCA CGCCTAAGCA AGCAAAGACT CAGCTAAAGC AATGGATCAG CTGCTTTAAA
CTCGGTCAAG TGCAGCCATT AATGTTTATG CCGCGTACCG CTATGGCCTA TGTGGAAGCA
GAAGGAAGTC ACAGACAGAA ACTTCTCGAG GCGCAATCAC AATGGCTCGA TGAACAGAGT
CAATTAGGTG AAGGCTTAGA GCCCCACTTT CAGCGTCTAT ACCGTTTCCC TGAAGACTTT
AGTGAGCAAA CCTTCGCTAA AACGGCAACC CGTTTACTTG AGCCACTTTT AAGCTTGTAT
CATAAAGACA AACTCAGTGA GTTGGCCAGC TTCGTCGAGG CCGGTCTAGA TACAGTGGAT
CTAACTGATG CACTAGGCGA GGCTAACTGA
 
Protein sequence
MLYLVQSNQM EALSKLLANE LRTPLPNSPL LMPEHILVQS PGMSTWLRLE IARQNNIAAG 
LEFPLPSSFI WQLCHTLLED VPKENAFTKA AMTWKLMELL PTLIDDEDFA PLANYLNNGN
ASQESVVKPA DSDDTLADSF SLSGDSEETQ ESEDQGESEQ NPLKLYQLCG QIADIFDQYL
VYRPDWISAW EANEPTLPPK GDKLSPAQAW QPILWRALID FNANTLGKSR YHRANLHQAL
FDALDDPNTS LEALPRRLFV FGISSMAPQT LDVLHYLAKR IDVIMLNLSP CQHYWGDIVD
PRLRARMALQ YADKHKLEVE WEDKLEVGNP LLANNGKMGR ELLDLLLELP EEHTAFDLDY
YQAPSTQTML NGVQYDILEL TTRGQSLGPD AALYLSLDGR RVITDSDDSI TVRSCHSPLR
EVETLHDHLL EMLSRPLTDE QLANGETPLA PKDIVIMMPD VAAYAPYIDA VFGAKQGGHY
IPYAIADRGA AQESPLIASF LHLLKINQSR FGLTDIISIL EVPAVLRRFE LDDESLAVIK
RWLDQAGVRW GRDETSRTEF QLPAFEQNSW AFGIKRLILG YSFSDDAPLY QERLSVNGVE
GQTAQALGKL LDFIEALDHV HHSLAQVCSL SERMTQLEAI LEDFYEVDDD EIVQRQEIRE
AIVKLNEELT EAGHTTPLTI EVIQNWFNSR LSESRVGQRY LAGSVNFCTL MPMRSIPFKL
VCLLGMNDGV YPRVQHPVGF DLVAQMGPRK GDRSRRLDDR YLFLEAILSA REQLYISYIG
NSERDDSERI PSMLVSELIE YCQLVYLPHD LEQQASTHEL EADGNASQQL IEKIEKGVAK
HLIRKQPLQP FDPRLYSAQN SLKSQDSAAP KLQQSYSAQW CPQGAQSSDT FTAFRNSYNG
FIGHNAQLLP FSEKAHAETI DGIETEELEL SALIRFFRNP AQYFFNRSLK VDLGLDIQAD
DNDEPFSLNA LERYKLQATL LDNAIGNGEE RPEQALLERL KAQGNLPLKP FDDLILNQYL
HDIKPLIGRC LYLKGEASHS VDIDLLFDET DVDLDDNSNN ELDNRLALNL VGRIDDLSAK
GLVNYRPGTA NGRDLIRVYL RHLCLCAMGS RTQVQAQSDS VVANTNMVSY LLDIGHFHAY
APITPKQAKT QLKQWISCFK LGQVQPLMFM PRTAMAYVEA EGSHRQKLLE AQSQWLDEQS
QLGEGLEPHF QRLYRFPEDF SEQTFAKTAT RLLEPLLSLY HKDKLSELAS FVEAGLDTVD
LTDALGEAN