| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2387 |
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| Symbol | def |
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| ID | 5662780 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 2910137 |
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| End bp | 2910628 |
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| Gene Length | 492 bp |
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| Protein Length | 163 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641237009 |
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| Product | peptide deformylase |
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| Protein accession | YP_001502242 |
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| Protein GI | 157962208 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
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| TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCAGTGT TAGACATTTT AACGATCCCC GATGAGCGCC TTAAGCGTAA AGCGGTTCCG
GTAACAGATA TTGAGTCTGT ACAAGGCTTT ATCGATGATT TGATTGAGAC TATGTATGAC
ACCGACGATG GCATTGGGTT GGCTGCAACT CAAGTTGGTA GCTTGCATGC TATCTTGGTC
ATCGATCTCT CTGAGGAGCG TGATCAGCCA ATGGTATTGA TTAACCCTGA GATAGTAGAA
TCTCGTGGTG AATACCAAGG TGAAGAGGGC TGTTTATCGA TTCCTGGGTA TCGCGCTAAG
GTAAATCGTC ATGAAGGCGT TAAGGTAAGC GCTTTAGATC GTCAAGGTAA AGCATTTGAA
ATCGATACCG ATGAATTCTT AGCCATTGTG TTGCAGCATG AAATGGATCA CCTTAATGGT
GTGGTGTTTA CTGACCATCT TTCTATGCTA AAGCAGCAGG TTGCCCTAAA GAAAGTAAAG
AAGTACAGAT AG
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| Protein sequence | MAVLDILTIP DERLKRKAVP VTDIESVQGF IDDLIETMYD TDDGIGLAAT QVGSLHAILV
IDLSEERDQP MVLINPEIVE SRGEYQGEEG CLSIPGYRAK VNRHEGVKVS ALDRQGKAFE
IDTDEFLAIV LQHEMDHLNG VVFTDHLSML KQQVALKKVK KYR
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