| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2385 |
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| Symbol | |
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| ID | 5662778 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 2908535 |
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| End bp | 2909284 |
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| Gene Length | 750 bp |
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| Protein Length | 249 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 641237007 |
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| Product | hemolysin III family channel protein |
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| Protein accession | YP_001502240 |
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| Protein GI | 157962206 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1272] Predicted membrane protein, hemolysin III homolog |
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| TIGRFAM ID | [TIGR01065] channel protein, hemolysin III family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.872491 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAAGATG TTACACTGCC CCTAATTGTG GTCAAACCAG AAGTCTTTTA TACGATGGCA
GTAGAACAAG CGACAGCTTC AGACAATCAA GGTTCTCATC CTACAGCTAA GAAAATAACA
GTGGCTAGCT ACTGTGCTAG AGAAGAGCTG GCAAACAGTA TAAGCCATGG TATCGGTGTC
ATTGTCGGTA TTGTCGGGCT TATTCTGTGT TTACTAAAGG GCTTTGATCA CTTAAGTTTT
GTTCAGTTAA CGGGTGTGGT TGTTTACTGC AGTAGTATTA TTTTGCTTTT TCTGTGCTCG
ACCTTATATC ACAGCGCGAC ATCACCAATG ACCAAACATA GGCTAAAAAT TGCCGACCAC
TGCGCTATCT ATCTGTTGAT CGCAGGTACC TATACACCGC TGATGCTTAT CACGTTAACC
AGCAGCGAAG CCGATTGGAT TCTGATTGCT ATCTGGTCAC TGGCAATTGG TGGAGTATTA
TTTAAAACTC TATTTATTGG ACGTTTTAAG GCCTTCAGTC TGGTGCTGTA TCTGGTGATG
GGCTGGCTTT GTGTAACTGT GATGCAAGAC TTAATTGCTA ACATGTCAGA TCTTGGCTTT
AATCTGTTAA TTGCAGGCGG ATTATTTTAT AGCTTAGGGG TTATTTTTTA TGTCGCTAAA
CGTATCCCTT TTAATCATGC TATTTGGCAC CTATTTGTAT TAGGCGGCGC AGTTTGTCAC
TTTCTGTGTA TCTATCTAAC AGTGATTTAA
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| Protein sequence | MKDVTLPLIV VKPEVFYTMA VEQATASDNQ GSHPTAKKIT VASYCAREEL ANSISHGIGV
IVGIVGLILC LLKGFDHLSF VQLTGVVVYC SSIILLFLCS TLYHSATSPM TKHRLKIADH
CAIYLLIAGT YTPLMLITLT SSEADWILIA IWSLAIGGVL FKTLFIGRFK AFSLVLYLVM
GWLCVTVMQD LIANMSDLGF NLLIAGGLFY SLGVIFYVAK RIPFNHAIWH LFVLGGAVCH
FLCIYLTVI
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