Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_2367 |
Symbol | |
ID | 5662760 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | - |
Start bp | 2885554 |
End bp | 2888325 |
Gene Length | 2772 bp |
Protein Length | 923 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 641236989 |
Product | diguanylate cyclase |
Protein accession | YP_001502222 |
Protein GI | 157962188 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.457753 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTTTGTCA CATTTCCGAC TCTGTCAGAC GTGGCTGTAG ATAAGTCTCC GCTCATCATA TCGATGAGTA ATGATACTTA TCCTTTCCAG TTTGTGGATG AAAACAATCA ACCCAGTGGG TTCTTGGTTG ATATTTGGTT GGAATGGTCG AAACAGACTC AAACCCAAGT GATTTTTAAA CCTGCGGATT GGATTACTTC TTTAAGTGAC TTAGCGCTAG GAAGGGCTGA TGTTCACATC GGCATGGCGA AAACAAGCGC AAGAGACCTG CAGTATGATT TTTCATCAAA AATAGCCAGT GTAAACAGTT ACCTTTATCT AAATTATCAG CTACCTATCC CATTAAGTTT TTCTGACATC ATTCCATACA GAGTTGGGGT TGTAAAAGGC GCAGCCCAGA TCGAAATTTT GAAGTCTCTG GAGCCAAAAC TTACATTTGC CTATTTTGAT AATCGTACTG AACTGCTGAA GTCGGTAATT GATGAGGAGA TTCTTGTATT TGTGGGCTTA GAAGGCTTTC TAAGAGAAAG CCAAATTAAC AACACTATAT CCGTTAAATA TCCGCTCGAG AACCGTAAGC TCATCTCTTC GTTTTCCCTC TATCCAGCAT TAAAGGAAGA AAATAAAGCA TTAGCATCAA AAATCACATC AGGATTTGAG GCAATCAGTC CAGAGGTTAT CGAAGAACTT AGGCACAAAT GGCTGGGCAA CCTTAGATAC CAAAATGATA TCGTGATTGC GATGCAAATG GGGGTTGAAC CATTTGCTGA TATCGGCACT GACGGCTTCC CCCATGGTTT GTTAATCGAT ATTTGGAAGT TATGGTCTGA GAAAACAGGG CTACCTATCC GTTTTGTGGC TGGCAGCATG AAACAGAGCA TCGATAATGT TAAGCGGGGG ATTGCCGACG TGCACTTAGG CTATCCAGAA AGTGCGTCTA TGCAAACAGG GCTTAATCGT GCACATACCA TCTATCGGGT GACGAGTCGT TTATTCTCGT TTGAGAAACC ACTGCAAAAT GTAGACGAGC TCAAAGGCAA AGTTGTTGCG GTTTCACCAA CGTCACCCTA TCTATCTGAG CTAATTGACA CACTTCCCGA GTCTGAAATT CGTTATTATC ACTCTGTTGA TAGCATGATT GAGGCATCAC AGAGAGGGGA GATTAGCGCG TTTGTTGCTG CAGCAGCCTG GACTCAGCAT TATTTGCTGT TAAATCATAA CTGGGATCAA TTTTATCAGT ATATGGCTCT GGAATTTAAG ACCGACTTGT ACGTGCTAAA TCGGGGTAGT CAGCAAGGGT TTGCAGACAG AATTTCTGCA GGTTTTACGC TGATCTCTCA GAGTGAATTG GCACAAATTG AGCGAAAGTG GATGTTGAAC CCTGAAGATA GAATTTTTAA AAGTCAGCAG AGTTTGATTA ACTTAACGCC TGTTCAGCAG CGAATAATTG ATGAGATTGG TACCGTGAAA GTCGGTTACC TTCGCAACTG GCGCCCGATG GAGTATCAAA AGGCTGGTCA ATACGCGGGG GTTAATAGTG AGATAGTTAA TATCATAGCA AATGAACTGG GGCTAGATAT TGAAACGCAA GTGTACGATG AATGGGGTAG CCTACTCGAT GCTTTAATCC GTGGTGAGGT GGATATGGCT GGCAGTGTGG CTAAAACGCC TGAGCGTGAA TTCCAATTGA GTTTCACCGA TTCCTATTGG CCCTCTCCTT GGGGGGTTGT AACATCATTA AATAGCGTGA GTACTTACAG TTTAGATGAG CTTAGTGGTC AACGAATTGC CGTCATAGAA GGCTATCATA TTGTGGGTGA GTTGATGCGA AAGTATCCAA ACCTGAAATT GATATTAGTA CCTGATAGTG ATGCTGGTCT ACGAGCAGTG AGTCAAGCTC AAGCAGATGT CTTTATCGAT AAGGTTGTCA ACCTAAACAG CGGTATTCGA CGCGGGCAGT ACGCTAATTT GAAAATGTCT ATGTTAGTCG ACTTCGCCGA GCAGCGCAGT CATTTTGGTA TACACCATAC TAAGGAAGCC CTGTTACCAT TAATCAACGC TGTTTTGGCC AATATTGATT CTACACGACA GCAGCAGATC CATCAGAAGT GGGCGTCGCA GACAGTCGAG TTTGGTCGTG AGGAATATGA AAACAAGGTG AAGATCGGTA TTCTAGTGCT TTCGATGTTA ACTATAGTCG TCTTTATAGC ACTATTAGCC AATAAGCGTT TACGTAAAGA GGTCGCTTTA CGTATTGAAG CCGAAAATAA AATGGCACAC TTTGCTAAAC ACGATAGCTT AACTCAATTA CCGAACCGTG CGCTAATCGA AGACCGCCTC GAACAGGCTA TCTTGCAGCA TGCACGGGAT ACGGCGCAGT TTGCAGTGGT CTTCATAGAC CTAGACAAAT TTAAACAGGT TAATGATCGA TATGGGCACC AAGTTGGTGA TAAATTACTT GTGCATGTAA GCGAAGTACT GACTAATGGT ATCCGTCGCT CTGATACGGT AGGGCGTCTT GGTGGCGATG AGTTTGTGAT TATTTTAAAT GATATCAAAG ATCTTAAATC GGTTTATGAC GTAACTGAAA ATTTATTAGC CAGTCTATCT AAGCCTTTTT TGATTAGTGA ACAAACAGTG TCAGTATCGG CCAGTATCGG TATTGCGGTT TATCCAAAAG ATGGTGAGTG TATCGATGCA CTATTAAAAA CAGCGGATCA ACAGATGTAT CGTGTAAAAA ATGCGGGTGG TAGGGCATAT AGAAGTACCT AG
|
Protein sequence | MFVTFPTLSD VAVDKSPLII SMSNDTYPFQ FVDENNQPSG FLVDIWLEWS KQTQTQVIFK PADWITSLSD LALGRADVHI GMAKTSARDL QYDFSSKIAS VNSYLYLNYQ LPIPLSFSDI IPYRVGVVKG AAQIEILKSL EPKLTFAYFD NRTELLKSVI DEEILVFVGL EGFLRESQIN NTISVKYPLE NRKLISSFSL YPALKEENKA LASKITSGFE AISPEVIEEL RHKWLGNLRY QNDIVIAMQM GVEPFADIGT DGFPHGLLID IWKLWSEKTG LPIRFVAGSM KQSIDNVKRG IADVHLGYPE SASMQTGLNR AHTIYRVTSR LFSFEKPLQN VDELKGKVVA VSPTSPYLSE LIDTLPESEI RYYHSVDSMI EASQRGEISA FVAAAAWTQH YLLLNHNWDQ FYQYMALEFK TDLYVLNRGS QQGFADRISA GFTLISQSEL AQIERKWMLN PEDRIFKSQQ SLINLTPVQQ RIIDEIGTVK VGYLRNWRPM EYQKAGQYAG VNSEIVNIIA NELGLDIETQ VYDEWGSLLD ALIRGEVDMA GSVAKTPERE FQLSFTDSYW PSPWGVVTSL NSVSTYSLDE LSGQRIAVIE GYHIVGELMR KYPNLKLILV PDSDAGLRAV SQAQADVFID KVVNLNSGIR RGQYANLKMS MLVDFAEQRS HFGIHHTKEA LLPLINAVLA NIDSTRQQQI HQKWASQTVE FGREEYENKV KIGILVLSML TIVVFIALLA NKRLRKEVAL RIEAENKMAH FAKHDSLTQL PNRALIEDRL EQAILQHARD TAQFAVVFID LDKFKQVNDR YGHQVGDKLL VHVSEVLTNG IRRSDTVGRL GGDEFVIILN DIKDLKSVYD VTENLLASLS KPFLISEQTV SVSASIGIAV YPKDGECIDA LLKTADQQMY RVKNAGGRAY RST
|
| |