Gene Spea_2356 details

Gene Information

• Locus tag: Spea_2356
• Symbol: rnfD
• ID: 5662749
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella pealeana ATCC 700345
• Kingdom: Bacteria
• Replicon accession: NC_009901
• Strand: +
• Start bp: 2872854
• End bp: 2873906
• Gene Length: 1053 bp
• Protein Length: 350 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 641236978
• Product: electron transport complex protein RnfD
• Protein accession: YP_001502211
• Protein GI: 157962177
• COG category: [C] Energy production and conversion
• COG ID: [COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD
• TIGRFAM ID: [TIGR01946] electron transport complex, RnfABCDGE type, D subunit

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGTTTA AGTTAGCCTC ATCACCTCAT TTAAAGGTGC AACTACAAAC CCAAAGTGTG 
ATGCGCCGGG TTATTCTATG TGCCCTGCCG GGTATTGCAG CTCAGTGTTA TTTTTTCGGC 
TTTGGCGTAC TCATACAAGT TATGTTGGCT ATTGTTGTTG CATTAACCGC AGAAGCAGCA 
GTACTTGCGT TAAGAAAACG CGCGGTACTT TCTACTATTA GCGATAACAG CGCCTTATTA 
ACGGCAATCT TAATTGGTGT CGCCATACCG CCTATCGCTC CATGGTGGTT AGTGGTGATT 
GGTACCTTGT TTGCGATTGT ACTCGTTAAG CAGCTTTACG GTGGTCTAGG GCAAAATATC 
TTCAACCCGG CAATGGCCGC TTACGTCATG CTGCTTATCT CGTTCCCGGT GCAGATGACA 
AGCTGGTCAA TTCCAACGGC GATTGCTCAA AACCCGATGG ATATTGGCTT AACGCTACAG 
GCAATATTTG GCTCGATGAG CGCCGAGCAA TTAAGTCTTT ATAAACTCGG TTTTGACGGC 
GTAGCTATGG CAACCCCGCT CGATACTGTT AAGACCGACC TATCTTTAGG CCTAACGACC 
TCAGAAAGCT TAACTAAAGC CATTTTCAGC GATGGCTATG GCGTAGGTTG GTTCTGGGTC 
AACATGGCTT ACCTAGCGGG CGGCCTTATT ATGCTGAAGC TAAAAGTGAT CCGCTGGCAC 
ATCAGTTTCG CCATTCTAGG TTCACTCTTC GTCTGTAGCA GTTTTGGTTA CCTGTTAAGC 
CCTGATACTC ATGTAGGTCC ACTACTGCAG CTATTTTCAG GTGCCACCAT GATTGCGGCA 
TTTTTTATCG CAACTGACCC TGTAACGGCC GCAACCAGTG TTAAAGGACG CCTGTTGTTT 
GGCACACTAA TAGGTGTGAT GGTCTATGTT ATTCGTACCT ATGGTGGCTA CCCAGACGCT 
TTCGCTTTTG CCGTTTTACT GGCCAATCTA TGTGCGCCAT TTATTGATTA TTACGTCAAG 
CCGCGTACTT ATGGACACCG CACGGGCAAC TGA 

 

Protein sequence

MAFKLASSPH LKVQLQTQSV MRRVILCALP GIAAQCYFFG FGVLIQVMLA IVVALTAEAA 
VLALRKRAVL STISDNSALL TAILIGVAIP PIAPWWLVVI GTLFAIVLVK QLYGGLGQNI 
FNPAMAAYVM LLISFPVQMT SWSIPTAIAQ NPMDIGLTLQ AIFGSMSAEQ LSLYKLGFDG 
VAMATPLDTV KTDLSLGLTT SESLTKAIFS DGYGVGWFWV NMAYLAGGLI MLKLKVIRWH 
ISFAILGSLF VCSSFGYLLS PDTHVGPLLQ LFSGATMIAA FFIATDPVTA ATSVKGRLLF 
GTLIGVMVYV IRTYGGYPDA FAFAVLLANL CAPFIDYYVK PRTYGHRTGN