| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2344 |
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| Symbol | |
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| ID | 5662737 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 2855384 |
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| End bp | 2857558 |
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| Gene Length | 2175 bp |
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| Protein Length | 724 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641236954 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001502199 |
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| Protein GI | 157962165 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAGAAAC ATAAATTTCA GCAATTGTTG GAGTACATTG TTAATTCAGA AGCAAAGATG
TTGGGCGACT TTAAGTCAAC AGCACAAATT GCGGCTGAAT TACTTTCTCA GCAACTTAGT
GTTTCGAGTG TTGTCGTCTC TGCGTTGTCA GCTGACACGG ATACACTGAC ACAAATCACA
CGCCTCAATA CTTCTCCAAA TTCATCAGCA CTTACCTCTA TTCGCCCAGT CCCTTCCTCT
TGTCCCAATT TTATCAGTCA ATTAAAAGAT GAACGTCATA TTACGGCAGA GCATTGCTGT
AGTGACAAGC GACTAATCGA ACTTCAAGCT TATTACCAGC AACAAGGGAT CTTGTCAGTT
TTAGAAGTGG CTATTCGTAT TAATGGACAT TTAGAGGGGA TGTTAAGTCT TGAGCGCAAA
GAGCAGACAG AGCCTTGGAG TGATCTTGAG GTGCAGCTCT GTTCACAAGT CGCAGATCAG
CTAGCATTAA CATTAGCGAC TCAATACGGC TATGATAAAG ATGAGCGCTT AACCCTGTTC
TTATCAGCTG CAGAGCAGTC AGAGCAGATA ATGATGGTGG TTAATTTAGC CACTGATCTT
ATTGAATATG TTAATAAGGC CCATTTTAAC TTAACCAAAG TTCCTAAAGA AAAAGTGTTA
GGTCGAAAGG TTCAGGTATT AGACTTTTTC AAACAATATC CCGACTTATC TGATGAGGTG
TTGAAAAAAG CTCGGGAAGG GGAGGCCTCT GAAGAAGAGG TCTATTTAGT CCGCGATGAT
GGCAGTTCTT ACTGGATGCG TTTTTCGGTA AAGCGCTTTA TCTCTGAAAG GGGCAACCAT
TTTGCCTTAG TTAATGCAGA AAATTGTACT GAAGAGCACT ATCATCAAAA TGAGTTATTT
CGTCTAGCTT GGCGCTGTAG CTTAACTGGG TTATATAATC GAACACACTT CAGTCGAGTC
CTTGAAAAAT CGCATACTGG CCATTTAGTC ATGATCGATC TTAGAGGGTT TAAACGTTTT
AACGATACCT ATGGTCATGC AAATGGCGAT ATCATCTTAG TTGAAATCGC CCGACGAATT
CGCCATTTTG CCGAAGTAAA TAAAATTTCA GAGGTCGCAC GAATAGGAAG TGATGAGTTT
GGGATTTTGT TTGAAAGTGG ATCAAGTGAA GCTTGGATAG AGCAGGCAAC TGAGCGATTA
TATCATCAGC TTGAAGCGAC GATTACCATT GGAATTGAGC AAATTGAACC AAGGCCGGCT
TTAGCTAGAG TCGATCTTTC CTCGATTGAG CAGAAGTTTT CGGCTTTGAC CTGTGCAGAC
ATCGCCATTC AATATGCCAA AAATCGGCAA GGTAATGCTA TCCAGTTGTT TAACTCTGCC
TTGTTAAATG CATTTAAAGA AGATGCTCAA ATTGAAAGAG ACCTAGCCCT CGCGATAAAA
GGGCGTCAAT TTGAACTGTA TTATCAACCA CTCAAAGATT TGGCAACTCA GTCTTATATC
GGTGCAGAAG CATTACTCCG TTGGCACCAT CCAAAGAAAG GCGTGCTCTA CCCTGGAGCT
TTCATCGATA TTGCCGAACA AACGGGACTG ATTAACGATA TTGGTTCATG GGTGCTTGAA
GCGGCATGTA AACAGTTAAA CCTTTGGCAA CGCCATCAAA TTGATATATC CATGCACGTA
AACGTGTCTG CAAGACAGTT TTTTAGCAGT AACTTGTTTG AGCAGGTTTG GGAGCTTGTA
ACCCGCTATC GTTTAAAACC AAATAGTTTG ATCCTTGAAA TCACCGAAAC TGAGTTAATG
GAAGATATTC GCTCTGCAAC TAATTTGTGT CACGAGCTAG CAGCACTCGG CGTTGGACTC
GCCATTGATG ATTTTGGTAC TGGCTATAGT TCGATGAGAT ACTTAAAACA GTTCCCAATT
AGTAAGTTGA AAATTGATCG CTCATTTATC TCAGACCTTT CTGTCAGTCG TGAAAGCCGA
GAAATAGTGA GTGCTATTAT TGCAATGGCA TCGGCACTCA ATATCTCGCT CACCGCTGAA
GGTGTCGAAA CAAAAGAGCA GGAGCAGTTC CTCGCTAAAC ACTTGTGTCA TCAAGCACAA
GGCTTCTTAT ATAGCCCAGC CCTACGAGTA TCCGAGTTCG GTCAGTTTTT ACAAAAATCC
TCAGCGATCC ATTAG
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| Protein sequence | MKKHKFQQLL EYIVNSEAKM LGDFKSTAQI AAELLSQQLS VSSVVVSALS ADTDTLTQIT
RLNTSPNSSA LTSIRPVPSS CPNFISQLKD ERHITAEHCC SDKRLIELQA YYQQQGILSV
LEVAIRINGH LEGMLSLERK EQTEPWSDLE VQLCSQVADQ LALTLATQYG YDKDERLTLF
LSAAEQSEQI MMVVNLATDL IEYVNKAHFN LTKVPKEKVL GRKVQVLDFF KQYPDLSDEV
LKKAREGEAS EEEVYLVRDD GSSYWMRFSV KRFISERGNH FALVNAENCT EEHYHQNELF
RLAWRCSLTG LYNRTHFSRV LEKSHTGHLV MIDLRGFKRF NDTYGHANGD IILVEIARRI
RHFAEVNKIS EVARIGSDEF GILFESGSSE AWIEQATERL YHQLEATITI GIEQIEPRPA
LARVDLSSIE QKFSALTCAD IAIQYAKNRQ GNAIQLFNSA LLNAFKEDAQ IERDLALAIK
GRQFELYYQP LKDLATQSYI GAEALLRWHH PKKGVLYPGA FIDIAEQTGL INDIGSWVLE
AACKQLNLWQ RHQIDISMHV NVSARQFFSS NLFEQVWELV TRYRLKPNSL ILEITETELM
EDIRSATNLC HELAALGVGL AIDDFGTGYS SMRYLKQFPI SKLKIDRSFI SDLSVSRESR
EIVSAIIAMA SALNISLTAE GVETKEQEQF LAKHLCHQAQ GFLYSPALRV SEFGQFLQKS
SAIH
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