| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2325 |
|---|
| Symbol | |
|---|
| ID | 5662718 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 2833701 |
|---|
| End bp | 2834753 |
|---|
| Gene Length | 1053 bp |
|---|
| Protein Length | 350 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 641236935 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001502180 |
|---|
| Protein GI | 157962146 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.74843 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATATGG CACAACATTT GTCTGAAACA GAGCTGTCAG CAAAAATACT GCGCCACGCT
GTACCAAAAA TGTCAGAATT AAATATTCCT GTCACCCCTG AAAACTATGC GGTTTGGTAT
GAATACTATA AAGGGATTAA TCTCGATCTG AAGCGTGCGA TAGATGGTTT ATTAGCTAAT
AACCTTGCCT TTACTCCTAC CATGAGTGAG GAGCTCTATA GGACTTATAT CCAGGTCCAC
TCACCTGAAC TCATCGAAAA TGTTCAAACA GAAACTCACA TACTCATCAA TAGCTTATTG
GCAAAGATAG CGAGTATGAG TAAGGGCACA TCACGTTTTT CTGAGTCGTT GACAGAATTT
GACACGGCTC TCAAAGATGA TCCTGAACCT GCTGTATTAC AGGATTTAGT GAACGGTATA
ACCTCTGAGC TCGATGAAAT AATCAGTGCC AATATTGATA TGGATAAGAG CCTCACCAGC
ATGAGTGAAG AGGTAGATGC GCTAAAAACA GAGATGGTCG AACTTCGTTC TGTAGTGATG
ACAGACCAAC TGACGTCACT GAATAATCGC CGAGCATTTG ACAAAGAAGT GATAAGCCAC
ATCGATAGTT TCAATCTTTC GAACGTTGAA AGTAGCTTGT TGGTTGTCGA TATAGATTAC
TTTAAGAAAT TTAACGATGT TCACGGCCAT TTAATCGGTG ATAAGGTGCT CGCCTATGTG
GCTCAGGCAC TTAAGAATGC CGTGAAAGGG GAAGATTTTG TGGCACGTTA TGGCGGCGAG
GAGTTTGTGG TCTTGCTGCC TAATACCTCA CATCAAGATG CCCATAAAGT TGCCGAGAAT
ATTCGGATCA AGATAGCAGG TCGTAATCTA ACCATAGGTA AAGAGAAGAA GTTACCCCTT
GGAAATGTCA CTGTCTCGGT GGGCGTGGCC TCACTTAAGG CGAGCGACGA TAAAGACAGT
TACTTTATTC GCGCCGATGA AGCCTTATAC CGGGCAAAGT CATCTGGGCG TAACTGTGTT
ATTGGTGAAA GGGTTGCCGA AGAACTGGTA TAG
|
|---|
| Protein sequence | MDMAQHLSET ELSAKILRHA VPKMSELNIP VTPENYAVWY EYYKGINLDL KRAIDGLLAN
NLAFTPTMSE ELYRTYIQVH SPELIENVQT ETHILINSLL AKIASMSKGT SRFSESLTEF
DTALKDDPEP AVLQDLVNGI TSELDEIISA NIDMDKSLTS MSEEVDALKT EMVELRSVVM
TDQLTSLNNR RAFDKEVISH IDSFNLSNVE SSLLVVDIDY FKKFNDVHGH LIGDKVLAYV
AQALKNAVKG EDFVARYGGE EFVVLLPNTS HQDAHKVAEN IRIKIAGRNL TIGKEKKLPL
GNVTVSVGVA SLKASDDKDS YFIRADEALY RAKSSGRNCV IGERVAEELV
|
|---|
| |