Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_2279 |
Symbol | |
ID | 5664763 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | - |
Start bp | 2760829 |
End bp | 2762043 |
Gene Length | 1215 bp |
Protein Length | 404 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 641236889 |
Product | major facilitator transporter |
Protein accession | YP_001502134 |
Protein GI | 157962100 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.47059 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTATAT TTCGTTTTCC TGCTCTGGTT TGGTTAGGGA TCGGTATTCT TATCATTAGC CTTGGGATCC GCCAGTCATT TGGGATCTTT ATGATGCCTA TCTCGATGAG CTTTGATGTT GGACGAGAAT TCTTCAGTTT TGCGATTGCC TTGCAAAACC TCCTCTTTGG TGTGTTTCAG CCATTTGTTG GGATGGCTGC CGATCGCTTT GGCTCGAAGA GAGTCATTAT GCTTGGCGCT ATAGCATATG GCTTAGGTCT GCTGCTCACC TCAATATCAA CGTCGACAGA AATGTTTTAT GTGTCTATTA GTATGTTGAT TGGTTTGGGA TTAAGTGCAA CCAGCTATGT GGTTGTACTT GGCGCTGTCG CAAAAGTAGT TCCGGCGGAG CATACAGCGA AGGCATTTGG TTTGACCACG GCCGCAGGCT CTTTTGGTAT GTTCGCGGTG ATCCCTGGCG CCCAAAGTTT ACTAACCGAG TTTGACTGGC AAACAGCACT ACAGGTGTTC GCACTGCTTT GTTGTTTTAT GTTCGCTTTC GCTTCTTTTA TGAAAACGGT TAAGCCAAGT GAAACTAGCT CTGAGCAATT GGATGATCAA ACATTAACAG AGGCGCTTAA GCAGGCTTGT ACTAATCGCA ATTACTGGCT TATACATTTG GGCTTCTTTG TATGTGGTTT TCATGTAATG TTTATTGCTA CTCATTTACC CAGTTATCTA TCTGATAAGC ATTTGGATAG CTCTACGGCA GCATTAGCAT TGGCATACGT AGGTATTTTT AATATCTTTG GCTCGTATTT TTGGGGCGTA ATGGGTGATA AGTTTAACAA ACGCTATGTG ATGTCAGCTT TATACTTAAT TAGAACCGTG GTGATAGCAG CTTTCGTGAC TTTACCTGTT ACTAATCATA CCGCGGCTAT TTTTGGTGCA GCTATTGGTT TTTGTTGGCT AGGTACAGTA CCACTGACTT CTGGTCTAGT TAGACAGATC TTTGGTGCGC GCTATTTATC GACTTTATAT GGTTTAGTGT TTTTTACTCA CCAGATAGGA AGCTTTCTCG GCGCCTGGGT TGGTGGTCGT ATTTATGACT ATTACGGTAG TTATGAACCG ATATGGTGGA GTACCGTGGT TTTAGCCTTT GTAGCGGCTT TACTACACTT ACCGATTGAT GACAGGCCTA TTATTTCAAA ACCTGTCCCA GCATTGAGCC GATAG
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Protein sequence | MSIFRFPALV WLGIGILIIS LGIRQSFGIF MMPISMSFDV GREFFSFAIA LQNLLFGVFQ PFVGMAADRF GSKRVIMLGA IAYGLGLLLT SISTSTEMFY VSISMLIGLG LSATSYVVVL GAVAKVVPAE HTAKAFGLTT AAGSFGMFAV IPGAQSLLTE FDWQTALQVF ALLCCFMFAF ASFMKTVKPS ETSSEQLDDQ TLTEALKQAC TNRNYWLIHL GFFVCGFHVM FIATHLPSYL SDKHLDSSTA ALALAYVGIF NIFGSYFWGV MGDKFNKRYV MSALYLIRTV VIAAFVTLPV TNHTAAIFGA AIGFCWLGTV PLTSGLVRQI FGARYLSTLY GLVFFTHQIG SFLGAWVGGR IYDYYGSYEP IWWSTVVLAF VAALLHLPID DRPIISKPVP ALSR
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