Gene Spea_2279 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_2279 
Symbol 
ID5664763 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand
Start bp2760829 
End bp2762043 
Gene Length1215 bp 
Protein Length404 aa 
Translation table11 
GC content43% 
IMG OID641236889 
Productmajor facilitator transporter 
Protein accessionYP_001502134 
Protein GI157962100 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.47059 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTATAT TTCGTTTTCC TGCTCTGGTT TGGTTAGGGA TCGGTATTCT TATCATTAGC 
CTTGGGATCC GCCAGTCATT TGGGATCTTT ATGATGCCTA TCTCGATGAG CTTTGATGTT
GGACGAGAAT TCTTCAGTTT TGCGATTGCC TTGCAAAACC TCCTCTTTGG TGTGTTTCAG
CCATTTGTTG GGATGGCTGC CGATCGCTTT GGCTCGAAGA GAGTCATTAT GCTTGGCGCT
ATAGCATATG GCTTAGGTCT GCTGCTCACC TCAATATCAA CGTCGACAGA AATGTTTTAT
GTGTCTATTA GTATGTTGAT TGGTTTGGGA TTAAGTGCAA CCAGCTATGT GGTTGTACTT
GGCGCTGTCG CAAAAGTAGT TCCGGCGGAG CATACAGCGA AGGCATTTGG TTTGACCACG
GCCGCAGGCT CTTTTGGTAT GTTCGCGGTG ATCCCTGGCG CCCAAAGTTT ACTAACCGAG
TTTGACTGGC AAACAGCACT ACAGGTGTTC GCACTGCTTT GTTGTTTTAT GTTCGCTTTC
GCTTCTTTTA TGAAAACGGT TAAGCCAAGT GAAACTAGCT CTGAGCAATT GGATGATCAA
ACATTAACAG AGGCGCTTAA GCAGGCTTGT ACTAATCGCA ATTACTGGCT TATACATTTG
GGCTTCTTTG TATGTGGTTT TCATGTAATG TTTATTGCTA CTCATTTACC CAGTTATCTA
TCTGATAAGC ATTTGGATAG CTCTACGGCA GCATTAGCAT TGGCATACGT AGGTATTTTT
AATATCTTTG GCTCGTATTT TTGGGGCGTA ATGGGTGATA AGTTTAACAA ACGCTATGTG
ATGTCAGCTT TATACTTAAT TAGAACCGTG GTGATAGCAG CTTTCGTGAC TTTACCTGTT
ACTAATCATA CCGCGGCTAT TTTTGGTGCA GCTATTGGTT TTTGTTGGCT AGGTACAGTA
CCACTGACTT CTGGTCTAGT TAGACAGATC TTTGGTGCGC GCTATTTATC GACTTTATAT
GGTTTAGTGT TTTTTACTCA CCAGATAGGA AGCTTTCTCG GCGCCTGGGT TGGTGGTCGT
ATTTATGACT ATTACGGTAG TTATGAACCG ATATGGTGGA GTACCGTGGT TTTAGCCTTT
GTAGCGGCTT TACTACACTT ACCGATTGAT GACAGGCCTA TTATTTCAAA ACCTGTCCCA
GCATTGAGCC GATAG
 
Protein sequence
MSIFRFPALV WLGIGILIIS LGIRQSFGIF MMPISMSFDV GREFFSFAIA LQNLLFGVFQ 
PFVGMAADRF GSKRVIMLGA IAYGLGLLLT SISTSTEMFY VSISMLIGLG LSATSYVVVL
GAVAKVVPAE HTAKAFGLTT AAGSFGMFAV IPGAQSLLTE FDWQTALQVF ALLCCFMFAF
ASFMKTVKPS ETSSEQLDDQ TLTEALKQAC TNRNYWLIHL GFFVCGFHVM FIATHLPSYL
SDKHLDSSTA ALALAYVGIF NIFGSYFWGV MGDKFNKRYV MSALYLIRTV VIAAFVTLPV
TNHTAAIFGA AIGFCWLGTV PLTSGLVRQI FGARYLSTLY GLVFFTHQIG SFLGAWVGGR
IYDYYGSYEP IWWSTVVLAF VAALLHLPID DRPIISKPVP ALSR