| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2204 |
|---|
| Symbol | |
|---|
| ID | 5662597 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 2673302 |
|---|
| End bp | 2674417 |
|---|
| Gene Length | 1116 bp |
|---|
| Protein Length | 371 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 641236807 |
|---|
| Product | trimethyllysine dioxygenase |
|---|
| Protein accession | YP_001502059 |
|---|
| Protein GI | 157962025 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2175] Probable taurine catabolism dioxygenase |
|---|
| TIGRFAM ID | [TIGR02410] trimethyllysine dioxygenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.20714 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTATTC ACAAATGTGA ACGTGTAGAT GAAAATCTTG CGATTCAATT TTCTAATAAT
AATGAAGCAA ACTTCAGTTT ATTTTGGTTA AGAGATCACA GTACCGATCA GTCCAGCCTT
AACCCAGATA CATTACAACG AGATGTTGAA ACCTTTTCCT TACCGACAGT GCCACAGGTA
GAACAGTTCC AGATTATCAA TAACGGCGCT CAACTGCGCA TTCATTGGCT AGATGGTGAT
CTAGTCAGCG AGTTTGATGC TAGCTTTCTT TTTAATATGG CCTGTACGCC AGTTAATGAC
CCCTCATATC AGTTATGGGC TAACGAGCTA CAAAACCAAG TCCCAGATTT TGATTTTGAA
CAGGTAACCG CTAACGATGC TGCTTTTTTG CCAGTATTAG AAAGTATGGA TCGGTATGGT
TTAGTGACAT TTTCAGGCAT GCCTTCAAAT ATGGAAGCGA CCAAAAAGTT ACTCAATCAA
GTCGGGTATA TCCGAGATAC CGTATTTGGT AGTTTATGGG ACTTTTCTAA TAATGGCGCT
CATAGTGACA GTGCCTATAC CAGTGTGGGG ATTGGGCTAC ATACCGACAG TACATATACA
CTTGACCCGC CAGGCTTACA GTTATTGCAT TGTTTGGCCT TCGACGGCGA AGGGGCCTTT
AACCAATTTG CCGATGGCTT TAAAGTTGCT CAAACCATTA AAAATGAAGA CCCTGCCGCT
TATGAGACTC TGAGCAAGAT TAAGGTGCCT GCCCATTATA TTGAGCCCGG CATCCAATTA
AGAGGCCAGC ATGAGGTTGT GCGCGAAGAT ATTAATGGCC AGTTTGAACA AATTTGTTTT
AATAACTTTG ATCGCAGTCC CTTTATGCTA AGTGCTAGTG AGCAAAAGGC TTTTTATCAT
GCTTATGGCC TGTTTCAACG TTTAATTAAC GACCCTAAAT ATCAGGTGAA CTTTCAATTA
CAACCAGGAC GTGCGGTATG GTTTGATAAT TGGCGTGTTC TTCATGCGCG TAGCGCTTTT
AGCGGCTTCC GACATCTTGC CGGCGGCTAC ACTAATCGAG AAGATTACAT AAGTAAAAAG
CTAACCTTAA AAGGGAAAAC ACCATGGCAG GAGTAA
|
|---|
| Protein sequence | MFIHKCERVD ENLAIQFSNN NEANFSLFWL RDHSTDQSSL NPDTLQRDVE TFSLPTVPQV
EQFQIINNGA QLRIHWLDGD LVSEFDASFL FNMACTPVND PSYQLWANEL QNQVPDFDFE
QVTANDAAFL PVLESMDRYG LVTFSGMPSN MEATKKLLNQ VGYIRDTVFG SLWDFSNNGA
HSDSAYTSVG IGLHTDSTYT LDPPGLQLLH CLAFDGEGAF NQFADGFKVA QTIKNEDPAA
YETLSKIKVP AHYIEPGIQL RGQHEVVRED INGQFEQICF NNFDRSPFML SASEQKAFYH
AYGLFQRLIN DPKYQVNFQL QPGRAVWFDN WRVLHARSAF SGFRHLAGGY TNREDYISKK
LTLKGKTPWQ E
|
|---|
| |