| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2194 |
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| Symbol | |
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| ID | 5662587 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 2662368 |
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| End bp | 2663924 |
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| Gene Length | 1557 bp |
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| Protein Length | 518 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641236797 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001502049 |
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| Protein GI | 157962015 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0247365 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTAATC AATTCAATAT CAGTCAATTC AATATCACTC AAGCCTATAT CAAGCATAAG
ATGCCAATCG GTGGTGTTCG AGCATTTCGA GTGAACACCT CAGTATTGAG TGTCGCCTGT
GGGATTTTGC TACTTTCTGG TTGCGCCATG GGGCCTGATT ACCAGAGACC CGATCTTGAA
ATACCGGAGC AATTTCACCA CGAGTTGCAG CAAACCGATG AGCAGAATGT TGGGCTGAAG
CATTGGCGTG ATTTTTATCT CGATCCTGAT CTACAGGTAT TGATAGAACA TGCTCTCGAT
CAAAACCTAG ATTTAGAGGG AGTGCGCTCA AGGTTGTTAG CCGCAAGAGC TGGGGTTACG
GTTACTGACG CAGCACTATT TCCAGTTGTA GGACTTGATG CAAATGGTGA GCGAGCATTA
GATAGCGCGT TGACCAGTAC TGATCCCGTT AAAGAAGATA CTTTTTATGT TGCCGGTACG
GTTTCGTGGG AATTGGATCT TTGGGGAGCG AATCGTCGAA GAAGTGAAGC TGAATTTGCC
AACTTCATCT CTTCACAAGA AGCACTTAAT TTAGCCACCA TCAGTCTAAT CAGTGATGTT
GCCAGCCGTT ATTATGAATG GCTCGATGTT GAGCAACGTT ATCAAATATC GCTTAATACT
GTCGAGCTAC GTAAAAAAGA GCGAGATCTT GCTAGGCTAC GTAAGCAAAA TGGTGTGATA
TCGGGCCTGC AAGTTAGGCA GGCGGAGGTG GAGTATCAAA GTGCCAGAGT CACACTACCG
GATCTTGATT ATGAGCGAAG TGAAAAGGCG AATCAGCTGC GAATATTACT GGGCGAATTT
ACGTATCCCC TTATTCCTAA AACTGAAGCG CAGTTAAAAG CTGAAGGAGC ATTGTTTCCA
GACTCATTTG CAGTGGGTAT TCCATCACAG ATGCTATCAC AACGCCCTGA TGTAAAGTCC
GCTGAGCAAG CTCTTGTTGC AGCCAATGCC AATGTCGGTG TCGCTAAAAC AGCATTCTTT
CCTAAATTTA CCATTAGCGG CAGCTATGGT TCTGAGTCTG AAAGCCTCAG TGACATATTT
GATAGCCAGG GGCTGACTTG GTCGCTTTTA GGCGGGGTAA CCGCTCCGAT TTTCAATGCA
GGTAAGATCT CAGCTCAATA TGATATTGCT CAGGAAAATG CCAAACAGGC TATGCTCAGT
TATAAAAGTA CGGTGCTTGG GGCATACTTT GAAGTAAATG ATGCGATGAA CAGTTTCAGA
CGCTCTGAGC TCGCGATTGA CGCTCAGCAG GAATTAGTCG TGGCATCAAC TGAATATACC
CGCTTAGCAA CGTTAAGATA CCGAAATGGT GTGTCGAGTT CGTTGGATCT GATGGATGCA
CAGCGAAGTC TGTTTAGCGC CGAACTGACT CTAAGTCAGG TGAAACGTGA TCGATTATTG
TCGATGATTA CGCTTTATCG TGCGCTGGGT GGGGGAGTAC TGACCCGTGA TGAGATGAAG
GCTGAACTTG AAAAACCGAC TGGCAAGCAA CAAGTTGAAG AAGTCACTAA TCAATAA
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| Protein sequence | MPNQFNISQF NITQAYIKHK MPIGGVRAFR VNTSVLSVAC GILLLSGCAM GPDYQRPDLE
IPEQFHHELQ QTDEQNVGLK HWRDFYLDPD LQVLIEHALD QNLDLEGVRS RLLAARAGVT
VTDAALFPVV GLDANGERAL DSALTSTDPV KEDTFYVAGT VSWELDLWGA NRRRSEAEFA
NFISSQEALN LATISLISDV ASRYYEWLDV EQRYQISLNT VELRKKERDL ARLRKQNGVI
SGLQVRQAEV EYQSARVTLP DLDYERSEKA NQLRILLGEF TYPLIPKTEA QLKAEGALFP
DSFAVGIPSQ MLSQRPDVKS AEQALVAANA NVGVAKTAFF PKFTISGSYG SESESLSDIF
DSQGLTWSLL GGVTAPIFNA GKISAQYDIA QENAKQAMLS YKSTVLGAYF EVNDAMNSFR
RSELAIDAQQ ELVVASTEYT RLATLRYRNG VSSSLDLMDA QRSLFSAELT LSQVKRDRLL
SMITLYRALG GGVLTRDEMK AELEKPTGKQ QVEEVTNQ
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