Gene Spea_2104 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_2104 
Symbol 
ID5662497 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand- 
Start bp2546540 
End bp2547550 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content43% 
IMG OID641236699 
Productglyceraldehyde-3-phosphate dehydrogenase, type I 
Protein accessionYP_001501959 
Protein GI157961925 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0881834 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTATCC GAGTTGCAAT TAACGGCTAT GGCCGTATCG GCCGCAATGT TCTACGTGCT 
CTATATGAAA GCGAAAAGAA CTATCCTATC AAGATTGTTG CACTGAACGA TTTAGGCGAT 
GCTTCAATCA ATGCTCATTT AACTAAGTAC GATTCAGTAC ATGGTCGCTT TAACGCAAAA 
GTAGAACATG CTGACGACGC AATTTTTGTT AACGAAGACA AAATCCTAAC CTTCCAAGAG 
CGTGATCCTT CAAAACTTCC TTGGAAAGAA CTAGATGTTG ACGTCGTATT CGAATGTACT 
GGTATATTCA CATCTAAAGA ATCAGTCCAA TCACATCTTG ATGCCGGTGC CAAAAAAGTC 
ATTATTTCTG CACCGGGTAA AAATGTTGAT GCCACCATTG TGTACGGCGT AAACAATGAA 
CTCATTACCA GTGACATGAC GGTAATTTCA AATGCCTCTT GTACTACTAA CTGTTTAGCA 
CCGTTTGCAA AGCCGCTAAA TGATGAGATT GGTATTGAGT CAGGTCTAAT GACTACGATT 
CACGCTTACA CAAACGACCA ACGTTTGTCT GATGTTTATC ATACCGATCT ACGTCGTGCT 
CGTGCAGCTG CAATGTCAAT GATCCCTACG CAAACTGGCG CAGCTGCAGC AGTCGGTCTT 
GTAGTACCTG AGCTTGCCGG CAAGTTTGAC GGCCTAGCTG TTCGAGTACC AACTGTTAAC 
GTTTCTTTGG TTGACCTATC TTTTGTTGCT GCACGTGATA CTTCAGTAGA AGAGATCAAC 
GCCATCATCG AAAAAGCGGC TTCAGTTGCA CCATTAAGTG AAGTACTAGC CGTTAACCAT 
GAGCCATTGG TATCTATCGA CTTTAACCAC AACCCATTCT CTTCAAACTT TGACGCAACA 
CAGACGCGTG TTAACGGTCG CCTCGTTAAA GTAATGGCTT GGTATGACAA CGAATGGGGC 
TTCAGTAACC GCATGCTAGA CAATGCTGTT GCATTAATGA ACGCTAAGTA A
 
Protein sequence
MTIRVAINGY GRIGRNVLRA LYESEKNYPI KIVALNDLGD ASINAHLTKY DSVHGRFNAK 
VEHADDAIFV NEDKILTFQE RDPSKLPWKE LDVDVVFECT GIFTSKESVQ SHLDAGAKKV 
IISAPGKNVD ATIVYGVNNE LITSDMTVIS NASCTTNCLA PFAKPLNDEI GIESGLMTTI 
HAYTNDQRLS DVYHTDLRRA RAAAMSMIPT QTGAAAAVGL VVPELAGKFD GLAVRVPTVN 
VSLVDLSFVA ARDTSVEEIN AIIEKAASVA PLSEVLAVNH EPLVSIDFNH NPFSSNFDAT 
QTRVNGRLVK VMAWYDNEWG FSNRMLDNAV ALMNAK