| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2073 |
|---|
| Symbol | rpsA |
|---|
| ID | 5662466 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 2513156 |
|---|
| End bp | 2514823 |
|---|
| Gene Length | 1668 bp |
|---|
| Protein Length | 555 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641236668 |
|---|
| Product | 30S ribosomal protein S1 |
|---|
| Protein accession | YP_001501928 |
|---|
| Protein GI | 157961894 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0539] Ribosomal protein S1 |
|---|
| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000000721785 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAAT CTTTTGCTGA TCTATTTGAA CAATCCCTTA ATGAACTTGA ATTCCGTCCT
GGTTCTATCG TACGTGGTGT AGTTGTTGCC ATCGAAAACG GTATGGTACT AGTTGACGCA
GGTCTTAAGT CTGAAAGCCC AATCCCAGCT GAACAATTCA AGAACGCTCA AGGCGCTCTA
GAAGTTGCTG TTGGTGATGA AGTTGACGTA GCTCTTGACT CTGTTGAAGA TGGTTTCGGT
GAAACTCAAC TTTCTCGTGA GAAAGCTAAG CGTCACGAAG CTTGGATCGT TCTAGAAAAA
GCGTACGAAG ATGCTGAAAC TGTAATCGGT ATCATCAATG GTAAGGTTAA AGGCGGTTTC
ACTGTTGAAT TAAACGGTAT CCGTGCATTC CTACCAGGTT CTCTAGTTGA CGTTCGCCCA
GTTCGCGACA CAGCTCACCT AGAAAACAAA GAATTAGAAT TCAAAGTTAT CAAGCTTGAC
CAGAAGCGTA ACAACGTTGT TGTTTCTCGT CGTGCAGTTA TCGAATCTGA AAGCAGCGCA
GAGCGTGATG CTCTTCTTGA GAACCTTCAA GAAGGTCAAT CAGTTAAGGG TATCGTTAAG
AACCTTACTG ACTACGGTGC ATTCGTTGAT CTTGGTGGTG TTGACGGTCT TCTACATATC
ACTGATATGG CTTGGAAGCG TGTTAAGCAC CCATCTGAAA TCGTTAATGT TGGTGACGAA
ATCAACGTTA AAGTTCTTAA GTATGACCGT GAGCGTACAC GCGTATCACT AGGTCTTAAG
CAACTTGGCG AAGATCCATG GTTAGAAATC AGCAAGCGCT ACCCAGAAAA CACACGTTTG
ACTGGTCGCG TAACTAACCT AACTGACTAC GGTTGTTTCG TTGAAATCGA AGAAGGCGTT
GAAGGTCTTG TTCACGTTTC TGAAATGGAT TGGACTAACA AGAACATCCA CCCATCTAAG
GTTGTTAACC TAGGTGATGA AGTTGAAGTT CTAGTTCTTG ACATCGATGA AGAGCGTCGT
CGTATCTCTC TAGGTCTTAA GCAATGTAAG ACTAACCCAT GGGATGATTT CGCAGAGCGT
TTCAACAAGG GCGACAAGGT TTCTGGTAAG ATCAAGTCAA TCACTGACTT CGGTATCTTC
ATCGGTCTTG ACGGCGGCAT CGACGGTCTA GTTCACCTTT CTGACATCTC TTGGAACGGT
ACTGGCGAAG ACGCAGTTGC TGAATACAAG AAAGGCGACG AAATCCACGC TGTAGTTCTT
TCAGTAGACC CAGAGCGTGA GCGTATCAGC TTAGGCGTTA AGCAAACTGA AGACGATCCA
TTCAACGCAT ACCTTGCTGA CAAGAAGAAA GGTGTTGTAG TAAATGGTGT TGTTACTGCA
GTTGACGCAA AAGGTGTTAC AATTGAACTA GCTGAGACTG TTGAAGGTTA CCTTCGCGTT
TCAGATATCT CTCGTGAGCG CATCGAAGAT GCATCAACAG TTTACTCTGT AGGTGACAAA
GTCGAATCTA AGTTCATGGG TGTGGATCGT AAGAACCGCA CTATCAGCCT ATCTATCCGT
GCGAAAGATG AAGCTGAAGA GAAAGAAGCA ATGGCTAGCT TGAACAGCCA GGAAGACGCT
GTGATGAGCA GTGCAATGGC TGAAGCGTTT AAAGCAGCTC GTAAATAA
|
|---|
| Protein sequence | MTESFADLFE QSLNELEFRP GSIVRGVVVA IENGMVLVDA GLKSESPIPA EQFKNAQGAL
EVAVGDEVDV ALDSVEDGFG ETQLSREKAK RHEAWIVLEK AYEDAETVIG IINGKVKGGF
TVELNGIRAF LPGSLVDVRP VRDTAHLENK ELEFKVIKLD QKRNNVVVSR RAVIESESSA
ERDALLENLQ EGQSVKGIVK NLTDYGAFVD LGGVDGLLHI TDMAWKRVKH PSEIVNVGDE
INVKVLKYDR ERTRVSLGLK QLGEDPWLEI SKRYPENTRL TGRVTNLTDY GCFVEIEEGV
EGLVHVSEMD WTNKNIHPSK VVNLGDEVEV LVLDIDEERR RISLGLKQCK TNPWDDFAER
FNKGDKVSGK IKSITDFGIF IGLDGGIDGL VHLSDISWNG TGEDAVAEYK KGDEIHAVVL
SVDPERERIS LGVKQTEDDP FNAYLADKKK GVVVNGVVTA VDAKGVTIEL AETVEGYLRV
SDISRERIED ASTVYSVGDK VESKFMGVDR KNRTISLSIR AKDEAEEKEA MASLNSQEDA
VMSSAMAEAF KAARK
|
|---|
| |