Gene Spea_2033 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_2033 
Symbol 
ID5662426 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand
Start bp2459679 
End bp2460815 
Gene Length1137 bp 
Protein Length378 aa 
Translation table11 
GC content50% 
IMG OID641236628 
Producthydrogenase (NiFe) small subunit HydA 
Protein accessionYP_001501888 
Protein GI157961854 
COG category[C] Energy production and conversion 
COG ID[COG1740] Ni,Fe-hydrogenase I small subunit 
TIGRFAM ID[TIGR00391] hydrogenase (NiFe) small subunit (hydA)
[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000339723 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAACAC ATGAAGCCCT TTACCAACAA GGTGTGGCGC GAATGGAACA ACTTCGCAAG 
CTACAGCCCC GTACTGGTGA AACGCTACAG CAAAAAATGG AACAAAATGG CATTACTCGT
CGCGACTTTA TGAAGTGGAG CGCTGCCGTT ACCGCCATGT TAGCTTTACC CTTACCCTTT
AGTACTTTAG TTGCTGAAGC TGCCGAACTT GCAGACCGAG TCCCGCTTGT TTGGTTACAC
ATGGCCGAAT GTACAGGCTG CAGTGAGTCG CTAATCCGTA CCGACACACC TAACTTAGAT
ACCCTAATCT TTAATCATGT CTCTCTTGAG TACCATGAAA CCTTAATGGC CGCAGCTGGC
TGGCAAGCAG AAGAAAATCT TGAGCACGCA TTATCAGCCT ACAAGGGTAA CTATCTGCTT
GCTGTTGAGG GCGCAGTTCC TACTGCAAAT AATGGCGCTT ACTTAACGGT GGGCTGTAAA
GGCCATACTG GCCTGCATAT CATTAAAGAA GCTGCCGAAG GCGCTGCAGC AATTATTTCT
GTCGGTACGT GCGCTGCCTT TGGCGGTATT CAAGCTGCCG CACCTAACCC AACAGGGGCC
AAAGGTGTTT ACGAAGTCGT TGATAGAACC GTTATTAACT TAGGTGGCTG CCCACCAAGT
GAGAAAAACA TCGTCGGCAC GCTGATGTAT TTCATCATGT TTGGTAAGTT ACCTGCCCTT
GATATGTTTA ACCGTCCTAA GTGGGCATAC GGTGCTCGCG TTCACGATAA CTGCGAGCGT
CGTGGCCGTT TTGATGCTGG CGAGTTTGTT GAAGAGTTCG GCGACCAGGG CGCAAAAGAT
GGCTATTGCC TCTATAAGGT TGGCTGTAAG GGTCCTTACA CCTATAACAA CTGTCCAACC
GAAAGATTCA ACCACCATAC CAGTTGGCCA GTGCTTGCCG GTCACGGCTG TATCGGCTGC
TCTGAGCCAA ACTTCTGGGA CGATATGGCT GATTTTGAGA AACCTTTAGG AAGGCAATTA
CTGCATGGTC TAGATGCGAC AAGCGACACT GTCGGCGCGG TCATTCTAGG TGCAACCGCA
GTCGGAATTG GCGCCCACGC TGTCGCCAGT ATTTTTGCCA AATCTGAAGA GGAATAA
 
Protein sequence
METHEALYQQ GVARMEQLRK LQPRTGETLQ QKMEQNGITR RDFMKWSAAV TAMLALPLPF 
STLVAEAAEL ADRVPLVWLH MAECTGCSES LIRTDTPNLD TLIFNHVSLE YHETLMAAAG
WQAEENLEHA LSAYKGNYLL AVEGAVPTAN NGAYLTVGCK GHTGLHIIKE AAEGAAAIIS
VGTCAAFGGI QAAAPNPTGA KGVYEVVDRT VINLGGCPPS EKNIVGTLMY FIMFGKLPAL
DMFNRPKWAY GARVHDNCER RGRFDAGEFV EEFGDQGAKD GYCLYKVGCK GPYTYNNCPT
ERFNHHTSWP VLAGHGCIGC SEPNFWDDMA DFEKPLGRQL LHGLDATSDT VGAVILGATA
VGIGAHAVAS IFAKSEEE