Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_2019 |
Symbol | |
ID | 5662412 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 2444505 |
End bp | 2445833 |
Gene Length | 1329 bp |
Protein Length | 442 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 641236614 |
Product | type II secretion system protein E |
Protein accession | YP_001501874 |
Protein GI | 157961840 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.547771 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAATTA GGCAAGAAAG TAATCGAATT CAAGATTTCC AGCCATTAAC TCAAGATGAG CAGGATATTA AGGTTGCCCT ATACGATAAG TTATTGAGCG TAATGGATCT ATCTCTTATT GAGACTGTCT CGAAGGAGCA AGCTCGAATT CAGATTAGTG AAATATGTGA GCAAATTTTA AATGGGTTGA ATCTACCAAT TAATCTCTCC ACACGAAAGC GTCTAGTAGG CCTGATTATT GATGAAGTAC TGGGACTTGG CCCCCTTGAA ACCCTTCTGG CCGACCCGTC AATATCAGAT ATTCTGGTAA ACTCCTACGA CAGGGTATAT GTAGAGCGAA AAGGTAAGCT AGAAGCCGTT AATATCAAAT TCCACAGTAA TTCACATCTT TTAAACATCA TTGATAGGAT TGTGTCTAGC GTAGGTCGAC GAATTGATGA GTCGTCGCCT ATGGTTGACG CAAGGCTCGC TGATGGTTCG CGTGTAAATG CAATTATCCC CCCTCTAGCT CTTGATGGAC CCTCACTTTC AATTCGTCGA TTCGCTGTAG ATAAGCTAAA TGCTGGGCAG CTTATTGAAA TTGGTTCTGT AACAGAGGCG ATGATTGAAC TTCTTAAAGG GGGAGTAAAG GGTAAGTTAA ATATTCTTGT CTCGGGTGGT ACGGGTAGTG GTAAAACAAC GTTACTGAAT ATGCTCTCAG GCTTTATTCC AAGTGATGAA CGCATCGTTA CTATTGAGGA CTCCGCCGAA CTACAATTAC AGCAACCCCA TACGGTAAGG CTAGAAACTC GTCCTCAGAA TATTGAAGGG AAAGGAGAAG TTTCACAGAG AGATCTAGTG AAGAACTGCT TGAGAATGAG ACCCGACCGA ATAGTGATAG GTGAGGTTCG TGGTGGTGAA GCATTAGACA TGCTTACGGC AATGAACACG GGTCATGAAG GGTCGTTAAC AACCTTACAT GCTAACAGCC CTAGAGATGC TCTTGGTCGA CTCGAATATA TGGTTTGTAT GGCAGGTTTT GATATGCCAG TAAGCAATAT TCGAACGCAG GTAGCTTCAG CAATCGATAT GGTTGTTCAG CTAGAACGTC AGGAGGACGG TCGCAGAAGA CTCACGAGTA TACAAGAAAT TAATGGCATG GAAGGGGATA TTATTACCAT GTCAGAAATC TTTCGTTTTA CGAGAAAGGG TTTAGATGAA GAAGGAATGA TTATTGGAGA ATTTGAGGCG ACAGGTGTCA TCCCAAGCTT CCATGCAAAA CTTAAGCAAC ATGGTATTGA GCTTCCATAC CATCTTTTCA ATTGTGGTGA TCCATTTGCA GAATTTTAG
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Protein sequence | MEIRQESNRI QDFQPLTQDE QDIKVALYDK LLSVMDLSLI ETVSKEQARI QISEICEQIL NGLNLPINLS TRKRLVGLII DEVLGLGPLE TLLADPSISD ILVNSYDRVY VERKGKLEAV NIKFHSNSHL LNIIDRIVSS VGRRIDESSP MVDARLADGS RVNAIIPPLA LDGPSLSIRR FAVDKLNAGQ LIEIGSVTEA MIELLKGGVK GKLNILVSGG TGSGKTTLLN MLSGFIPSDE RIVTIEDSAE LQLQQPHTVR LETRPQNIEG KGEVSQRDLV KNCLRMRPDR IVIGEVRGGE ALDMLTAMNT GHEGSLTTLH ANSPRDALGR LEYMVCMAGF DMPVSNIRTQ VASAIDMVVQ LERQEDGRRR LTSIQEINGM EGDIITMSEI FRFTRKGLDE EGMIIGEFEA TGVIPSFHAK LKQHGIELPY HLFNCGDPFA EF
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