Gene Spea_2019 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_2019 
Symbol 
ID5662412 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand
Start bp2444505 
End bp2445833 
Gene Length1329 bp 
Protein Length442 aa 
Translation table11 
GC content42% 
IMG OID641236614 
Producttype II secretion system protein E 
Protein accessionYP_001501874 
Protein GI157961840 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4962] Flp pilus assembly protein, ATPase CpaF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.547771 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAATTA GGCAAGAAAG TAATCGAATT CAAGATTTCC AGCCATTAAC TCAAGATGAG 
CAGGATATTA AGGTTGCCCT ATACGATAAG TTATTGAGCG TAATGGATCT ATCTCTTATT
GAGACTGTCT CGAAGGAGCA AGCTCGAATT CAGATTAGTG AAATATGTGA GCAAATTTTA
AATGGGTTGA ATCTACCAAT TAATCTCTCC ACACGAAAGC GTCTAGTAGG CCTGATTATT
GATGAAGTAC TGGGACTTGG CCCCCTTGAA ACCCTTCTGG CCGACCCGTC AATATCAGAT
ATTCTGGTAA ACTCCTACGA CAGGGTATAT GTAGAGCGAA AAGGTAAGCT AGAAGCCGTT
AATATCAAAT TCCACAGTAA TTCACATCTT TTAAACATCA TTGATAGGAT TGTGTCTAGC
GTAGGTCGAC GAATTGATGA GTCGTCGCCT ATGGTTGACG CAAGGCTCGC TGATGGTTCG
CGTGTAAATG CAATTATCCC CCCTCTAGCT CTTGATGGAC CCTCACTTTC AATTCGTCGA
TTCGCTGTAG ATAAGCTAAA TGCTGGGCAG CTTATTGAAA TTGGTTCTGT AACAGAGGCG
ATGATTGAAC TTCTTAAAGG GGGAGTAAAG GGTAAGTTAA ATATTCTTGT CTCGGGTGGT
ACGGGTAGTG GTAAAACAAC GTTACTGAAT ATGCTCTCAG GCTTTATTCC AAGTGATGAA
CGCATCGTTA CTATTGAGGA CTCCGCCGAA CTACAATTAC AGCAACCCCA TACGGTAAGG
CTAGAAACTC GTCCTCAGAA TATTGAAGGG AAAGGAGAAG TTTCACAGAG AGATCTAGTG
AAGAACTGCT TGAGAATGAG ACCCGACCGA ATAGTGATAG GTGAGGTTCG TGGTGGTGAA
GCATTAGACA TGCTTACGGC AATGAACACG GGTCATGAAG GGTCGTTAAC AACCTTACAT
GCTAACAGCC CTAGAGATGC TCTTGGTCGA CTCGAATATA TGGTTTGTAT GGCAGGTTTT
GATATGCCAG TAAGCAATAT TCGAACGCAG GTAGCTTCAG CAATCGATAT GGTTGTTCAG
CTAGAACGTC AGGAGGACGG TCGCAGAAGA CTCACGAGTA TACAAGAAAT TAATGGCATG
GAAGGGGATA TTATTACCAT GTCAGAAATC TTTCGTTTTA CGAGAAAGGG TTTAGATGAA
GAAGGAATGA TTATTGGAGA ATTTGAGGCG ACAGGTGTCA TCCCAAGCTT CCATGCAAAA
CTTAAGCAAC ATGGTATTGA GCTTCCATAC CATCTTTTCA ATTGTGGTGA TCCATTTGCA
GAATTTTAG
 
Protein sequence
MEIRQESNRI QDFQPLTQDE QDIKVALYDK LLSVMDLSLI ETVSKEQARI QISEICEQIL 
NGLNLPINLS TRKRLVGLII DEVLGLGPLE TLLADPSISD ILVNSYDRVY VERKGKLEAV
NIKFHSNSHL LNIIDRIVSS VGRRIDESSP MVDARLADGS RVNAIIPPLA LDGPSLSIRR
FAVDKLNAGQ LIEIGSVTEA MIELLKGGVK GKLNILVSGG TGSGKTTLLN MLSGFIPSDE
RIVTIEDSAE LQLQQPHTVR LETRPQNIEG KGEVSQRDLV KNCLRMRPDR IVIGEVRGGE
ALDMLTAMNT GHEGSLTTLH ANSPRDALGR LEYMVCMAGF DMPVSNIRTQ VASAIDMVVQ
LERQEDGRRR LTSIQEINGM EGDIITMSEI FRFTRKGLDE EGMIIGEFEA TGVIPSFHAK
LKQHGIELPY HLFNCGDPFA EF