| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2013 |
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| Symbol | |
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| ID | 5662406 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 2439095 |
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| End bp | 2440531 |
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| Gene Length | 1437 bp |
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| Protein Length | 478 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 641236608 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_001501868 |
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| Protein GI | 157961834 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCATTCC TTCGCCACTG TTCAATTGTT TGTTTATTGG CATTATTACA GCTATCAACC
GCTTATGCAG GAGGACCAAC GGCAGGAGCT AGAAATGATG TCCAATTGAT CCCGATTTTT
AAATCAAGAG TATTAATGCT GAAGGGACCT GTACATAGAG TGTCAGTAGG TAATCCAAGT
ATTGCCGATA TAAAACTTCT TCCAAATGAC GAGCTTTATA TTTTGGGTAA ACAGCTAGGC
AGCACAAATG TCATGATATG GGATAAAAAT GAGCAACTAG CAAGAATAAT GGATATTGAG
GTGACCCATG ATTTAAATGG TTTAAAGACT AGGTTATATC AGTTCCTTCC TACTGAGAAA
TTAGGTGTGC AGACTTCTCA AGGACAATTG CTATTAAGCG GGCAAGCATC AAACTTACAA
AAAATGAATA CTGCGGTGGA GTTAGCCCAA GGTTATGCCG AAGCGGCAGC TGGAGGACAA
GCTCCGAGTA AAGTGCTTAA TATGATGACC ATTGGAGGCG ACCATCAAGT CATGTTGGAA
GTGGTCGTTG CAGAGGTACA AAGAAATGTA GCGAGGCAAT TTGACTCCAA GTTCTTTATC
TTCAATCAAG GCTCAAATTT ATCTGGTGGT CTTGTTGGAG GAGGTGGAGG TTTTGATCCT
GGCAGCATTG GTGGAATAGA TGCTAAGGGC TTATTTGCAC AATATATTAA CGGCGATTTA
ATGATGAATT TTGCGCTCGA TATCGCTAAA CAGAACGGAT TAGCAAAAGT ATTAGCTGAG
CCGAATGTTA CGGCTATGAG CGGCCAGTCT GCAGAGTTTC TCTCTGGTGG CGAATTTCCT
ATTCCAGTCC CTGGTGAAAA TGGCAATACA ACCATTGAAT ACAGAGACTA TGGTGTCGGT
GTTAAATTTG TACCGACAGT TCTCGACTCT GGTCAGATAA ATTTAAACTT AAATGTAGTG
GTCAGTGAAA TTAGCACAGC AAATGGCTTT GCCATTTCAG GCAATACATC TACTACATTA
GTTGTACCAT CACTCGTAAA ACGGAGCACA GCAACGACTG TCGAGTTGGC TGATGGTCAA
ACGATTGCTA TCAGTGGTTT GATCAGTGAC ACATTGAGAG AAAATATTGA TAAATTACCT
GGCTTAGGGG ATGTCCCGGT TCTAGGACAG TTATTTACTA GCAAAAGCTT TCAAAGTGGA
CAAAGTGAGT TAGTTATTTT AGTAACACCT AGACTCGTAA GGGCTTTCAA TCGAAAAGAT
ATCTCCTTGC CCACAGATGG TTTTGTTCTT CCATCAGATG TTGAGTTTTA CTTGTTAGGT
AAGCTGTCCC ATAAAGAAAA CTCTGATGAC AGTAGTGATA CTCCTTATGA ACCTGCCGAA
TCAGATACGC AATTAGATGA TACAGGCACT CAGCAAAAAT ATGGTCATTC ACTTTAA
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| Protein sequence | MSFLRHCSIV CLLALLQLST AYAGGPTAGA RNDVQLIPIF KSRVLMLKGP VHRVSVGNPS
IADIKLLPND ELYILGKQLG STNVMIWDKN EQLARIMDIE VTHDLNGLKT RLYQFLPTEK
LGVQTSQGQL LLSGQASNLQ KMNTAVELAQ GYAEAAAGGQ APSKVLNMMT IGGDHQVMLE
VVVAEVQRNV ARQFDSKFFI FNQGSNLSGG LVGGGGGFDP GSIGGIDAKG LFAQYINGDL
MMNFALDIAK QNGLAKVLAE PNVTAMSGQS AEFLSGGEFP IPVPGENGNT TIEYRDYGVG
VKFVPTVLDS GQINLNLNVV VSEISTANGF AISGNTSTTL VVPSLVKRST ATTVELADGQ
TIAISGLISD TLRENIDKLP GLGDVPVLGQ LFTSKSFQSG QSELVILVTP RLVRAFNRKD
ISLPTDGFVL PSDVEFYLLG KLSHKENSDD SSDTPYEPAE SDTQLDDTGT QQKYGHSL
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