Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_2012 |
Symbol | |
ID | 5662405 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 2438231 |
End bp | 2439049 |
Gene Length | 819 bp |
Protein Length | 272 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 641236607 |
Product | SAF domain-containing protein |
Protein accession | YP_001501867 |
Protein GI | 157961833 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3745] Flp pilus assembly protein CpaB |
TIGRFAM ID | [TIGR03177] Flp pilus assembly protein CpaB |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAATAATA AAACCGTCTT ATTTGTCATT TTGTCATTAG TGTTTGGAGT TACTGCTGTT TATCTTGCGC AGAACTGGCT GAAAACAAAT ACTAAAACAG AAGCAGTAGC ATCAACATCC AATGTGATGA CTATGGTGAC AGAGGTACCT TTGGGGACAA TTATAGAAAG AAAGCATCTC GCCTTAACTC CAGTGGCTGA CAATTTAATC CCAGAAGGGG CTATCACGGA TATTACCGAG GCAGAAGGGT TTGTGGTCAA GCATCGACTT TATCAAGGGG AGGTATTACG CAAAGAGCGA ATAACTCCTA AAGGAGAGGG GAGCACATTA GCCAGTTTGA TTACCCCGAC AATGCGTGCT GTTACGATAA GGGTAAACGA TGTTGTTGGT GTGGCTGGTT TCCTACTGCC TGGCAACAGA GTCGATATTA TCAATATTTT TACAACTCCT AGTCTAAAAA CGGACATTGT GCTTTCAAAC GTGAAAATTC TCGCTATCGA CCAAAAAGCA TCGAATGATG AGAACAAACC AGTCTTAGTG CGAGCGGTAA CATTAGAATT AAGCTTAGAG CAGGCTGAAA CCTTGATGAT TGCCAAGAGT CGAGGTTCTT TGCAGTTGGC ATTAAGAAAT CCCAATGACA CGGCAGTTAT AGAATTAGCA GATATTGAAG AAGCGAATAA AACAGAAAAG ACTGATAAAG AAGTGCTTTC TCAAACTGTT AAAGTCGCAC AGTTTGCCAG AGTATCTGAA GCTAGCACAA ATAAGGTTTT GTTGCTTAAA GGCATGAGTG AGCAAGAGAT AAAAATCGAC AACAATTAA
|
Protein sequence | MNNKTVLFVI LSLVFGVTAV YLAQNWLKTN TKTEAVASTS NVMTMVTEVP LGTIIERKHL ALTPVADNLI PEGAITDITE AEGFVVKHRL YQGEVLRKER ITPKGEGSTL ASLITPTMRA VTIRVNDVVG VAGFLLPGNR VDIINIFTTP SLKTDIVLSN VKILAIDQKA SNDENKPVLV RAVTLELSLE QAETLMIAKS RGSLQLALRN PNDTAVIELA DIEEANKTEK TDKEVLSQTV KVAQFARVSE ASTNKVLLLK GMSEQEIKID NN
|
| |