| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2010 |
|---|
| Symbol | |
|---|
| ID | 5662403 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 2436305 |
|---|
| End bp | 2436871 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 641236605 |
|---|
| Product | peptidase A24A prepilin type IV |
|---|
| Protein accession | YP_001501865 |
|---|
| Protein GI | 157961831 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4960] Flp pilus assembly protein, protease CpaA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.516572 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGATA ATCAATTGCT ATTTCAAGTC GTCACCGCTG GAGTATTTTT TGTTTTAGCG
ATTACCTTTG ATTTAGTCAG AGAAAAAATA CCAAATTGGT TGTGCTTAAT TGCTATTTTT
TGCGGGTTTT TAATTAATAG TTATTTTGCT CAATTAAATG GACTTATGCT GTCTTTTATC
GGTTTTAGCC TCGCATTTAT TATCTTGTTT CCGACCTTTA TGTTCAAAAT TCTAGGCGCG
GGAGACATTA AACTTATGAT GGGAATAGGC GCATTAATTG GGCCACAATT ATTAGTTTGG
AGTATTGCAT ACGCCATTAT TGCTGGTGCA ATAACAAGTT TATTACTAGT GATATGGAAA
TCAGGTCTAA GCGGTTGTTT CAAAACGGTA CGACGTTATT GGGATTGCTT TTATTTGAGA
ACCTATTTTA AACCTGAAGA GGGGGAGGCT GCAGGACAAA GGGTTCCCTA TGCCCCAGCT
CTCGCAATTG GGTGGTTATG GGCCTGTTCT CTAAATCCAG ATATTACATA CTTATACTCA
ACTATCAGTT ACTCTTTATT TTCGTAG
|
|---|
| Protein sequence | MADNQLLFQV VTAGVFFVLA ITFDLVREKI PNWLCLIAIF CGFLINSYFA QLNGLMLSFI
GFSLAFIILF PTFMFKILGA GDIKLMMGIG ALIGPQLLVW SIAYAIIAGA ITSLLLVIWK
SGLSGCFKTV RRYWDCFYLR TYFKPEEGEA AGQRVPYAPA LAIGWLWACS LNPDITYLYS
TISYSLFS
|
|---|
| |