| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1982 |
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| Symbol | |
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| ID | 5662376 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 2406610 |
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| End bp | 2407692 |
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| Gene Length | 1083 bp |
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| Protein Length | 360 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641236579 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001501839 |
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| Protein GI | 157961805 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000000542821 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAA TAATAATATT CCTTACTTTG CTTGGTGCCG TCGGCGCCTA TTTCTATTTA
CAACAAGCTC CCAGCGAAAA AGTGAAAAGA GCGCGGCCGA CACCGAATGT GGTGATAACT
AAGGCGTCGA TGCAAGTTAT TCGTGATGAG GTCGAGGCGC TCGGTACCAG TAAGGCAAAT
GAATCGATTA CCGTCACTCC AAAAGTAACT GAAGTGGTTA CCCAAGTGAA CTTTAATGAT
GGTGAACTGG TTAAGAAAGG CCGATTACTG GTTCAATTGC AGGATCGTGA GCAGCTTGCT
CGTGTAACGG TAGCTAAAGT AAAAGTAAAA GATCACCAGC GAGAACTTGA GCGAATTCGT
ACGCTTGTGA CGAGTCAAAC TATTGCCGAA CTTGAGCGCG ATCGCCTACA AACCCTTATC
GACACAGCAA AAGCTGAATT AGTTCAAGCA GAGTCAGCCC TAAAAGATAG AAGGATTACT
GCTCCATTTT CTGGTTCATT GGGCCTACGT CAAGTGAGTA TTGGCGCACT AGTAACCCCT
GGCAATGCAA TCACGACCTT AGATGATATC TCAGTGATCA AATTGGACTT TTCCGTACCC
GAACGCTTCT TACAGGCTCT AGCATTAGGA AAAACCGTCG AAGCGACCGC TGTGGCATTC
GACGGGGAGA TATTTAACGG CAAAGTCGTT TCTATCGATA GTCGAATAAA TCCAAAGACT
CGCGCAGTTA TCGTCAGAGC GGAGATCCCC AATCCAAAGC AAAGATTGCT ACCCGGAATG
TTGATGAAGG TGAAGTTGAT CAAAACCAGT AGAGATGCGC TCATCCTCCC TGAATCAGCC
ATCATTCCAA TCCAAGACAG GCATTATGTC TATTTGGTGA ATGAAGAAGG TGTGATAGAG
CAAAAGCAGG TCTCTTTAGG TTTACGCAAA CGTGGTTGGG TCGAAATCTT GGATGGCGTA
ATGTTGAATG ATCAAATCGT AATTCGTGGT TTATTGAAAG TCCGTCCAGG GGACAAAGTA
AAAGTGACCC TAAGTGAGCG CTTTAGCTTT CTTAAGCAAG CGAGTGTGGA GCCAGTGGCA
TGA
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| Protein sequence | MKKIIIFLTL LGAVGAYFYL QQAPSEKVKR ARPTPNVVIT KASMQVIRDE VEALGTSKAN
ESITVTPKVT EVVTQVNFND GELVKKGRLL VQLQDREQLA RVTVAKVKVK DHQRELERIR
TLVTSQTIAE LERDRLQTLI DTAKAELVQA ESALKDRRIT APFSGSLGLR QVSIGALVTP
GNAITTLDDI SVIKLDFSVP ERFLQALALG KTVEATAVAF DGEIFNGKVV SIDSRINPKT
RAVIVRAEIP NPKQRLLPGM LMKVKLIKTS RDALILPESA IIPIQDRHYV YLVNEEGVIE
QKQVSLGLRK RGWVEILDGV MLNDQIVIRG LLKVRPGDKV KVTLSERFSF LKQASVEPVA
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