| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1981 |
|---|
| Symbol | |
|---|
| ID | 5662375 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 2405142 |
|---|
| End bp | 2406239 |
|---|
| Gene Length | 1098 bp |
|---|
| Protein Length | 365 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 641236578 |
|---|
| Product | NlpB/DapX family lipoprotein |
|---|
| Protein accession | YP_001501838 |
|---|
| Protein GI | 157961804 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3317] Uncharacterized lipoprotein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000195989 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTAAAGC AAATATCACC ACTGATTTTA GTTGCAGCCG TTACGGCATG TAGTACGCCA
ATTGACAGAA GGCAAGCTAA CGACACTGAT CAGAATTATC AAGATCTAAC AGTTGAGCCA
CAATTAGTTA TTCCTGAAGG CTTACATAAG CCGACATACA GTAAAGAATA CGATATTCCT
GCTGTAGGGA GTAAAGCCGA TGCAAGCTTA GTCGGTAAGA GTTTAGATAT TCGTCCACCT
CTACAGGTAC TGCCAATGGC TGAAGGTACT CGTGTAGAAG ACGGGACTGA TAATATTAAA
ATCGTTGTTG AGTCTATTGA TAACGATATC GATCTTAAAC AAGAACTTTT TGATGTCCTA
AAAGATTATT TCGCTAGCAA GTCGATTTCG CTTCGCAGTG AAGATTACGA GAACGGCACA
CTTGAGACCG ATTGGATTGA AAGTGAACAG GTCATCGAAT CCAGTTTTTG GGGTGGCGAT
AAAGTTTATA AGCTTAAGCA ACGTTACATC TATCATGTCG ATGTGCGCCC ACATGGTCGC
AGTGGTAACT TAACCATAGA TCTTATCGAA CATGAAGAAA GTTTCGACGG CGATCAGCAA
GACATCCTAT TAAGTGGTGA AGATAAACGT CGTTATACGA TTGATAGATT GAATGACTCT
ATTAGCTATA TCAGCATTGA GCGTGCCAAG GCACTTAAGG CTAAACGTCT TAAGCAAAGC
TTAGGTATCG ATGTCGATCT GATTGCTCAA GCCGAAGAGC AAGCATATTG GTTGGCAGAC
GCTAAGTTTA AACGCACTTG GGATCGTCTA CGCATTGTAT TACCTGAGAT GGGTTTTGAG
ATCATCGATA TGGACAGCAA TAAAGGGCTG CTTTATATCA ATATTACCGA TGACTCTGGG
TTCTGGAGTT CATTATGGAG CGATAAAGAG TTGCCTATCG AGGCTGGCTC TTACCGTATT
GAGCTAAAAG ACGGAGCGGA TAATAAAACA GAGATCCATC TGTTAAATGC GAAAAATGAA
CCACTTTCTA GTGAAGTTGT TAGCGCAGTT TATGACGGTT TCTCCGAGTT AATGCAAGAA
GATCGTAAGA CGCGTTAA
|
|---|
| Protein sequence | MLKQISPLIL VAAVTACSTP IDRRQANDTD QNYQDLTVEP QLVIPEGLHK PTYSKEYDIP
AVGSKADASL VGKSLDIRPP LQVLPMAEGT RVEDGTDNIK IVVESIDNDI DLKQELFDVL
KDYFASKSIS LRSEDYENGT LETDWIESEQ VIESSFWGGD KVYKLKQRYI YHVDVRPHGR
SGNLTIDLIE HEESFDGDQQ DILLSGEDKR RYTIDRLNDS ISYISIERAK ALKAKRLKQS
LGIDVDLIAQ AEEQAYWLAD AKFKRTWDRL RIVLPEMGFE IIDMDSNKGL LYINITDDSG
FWSSLWSDKE LPIEAGSYRI ELKDGADNKT EIHLLNAKNE PLSSEVVSAV YDGFSELMQE
DRKTR
|
|---|
| |