Gene Spea_1975 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_1975 
Symbol 
ID5662369 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand+ 
Start bp2401029 
End bp2401643 
Gene Length615 bp 
Protein Length204 aa 
Translation table11 
GC content40% 
IMG OID641236572 
Productlysine exporter protein LysE/YggA 
Protein accessionYP_001501832 
Protein GI157961798 
COG category[R] General function prediction only 
COG ID[COG1279] Lysine efflux permease 
TIGRFAM ID[TIGR00948] L-lysine exporter 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0270358 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAAACAG CATTTATTCA AGGTATGGGA ATAGGCGGAA GCCTAATTAT GGCAGTGGGT 
GCACAAAATG CATTTGTTTT AAAACAAGGG CTTAGGCGGT CTCATTCTTT GCCTATTGCA 
GCTATTTGTT CATTTATCGA TGCGATTATG ATAACCGCTG GTGTTGCAGG GTTAGGTCAT 
CTAATTTTAG CCTTTCCATT GATTAAAGAT ATCGCCAGTA TTGGCGGAGC GCTTTTTCTG 
ATTATTTACG GTTACGGAGC GCTAAAGTCT TCATTTAGCG AATCGAGAAT GGAAAGTGAG 
GAAGCGCTGG CGGCTGATAG TTTAAAGAAG GCTGTGTTAA CTACTTTGGC AATTAGTTTG 
TTAAACCCTC ATCTCTATCT GGATACCGTG GTTCTACTCG GTAGCATTAG CGTACAGTTT 
GAAGGAACAG AAAAGCAATG GTTTGGAGCT GGTGCAGTAT TGGCTTCTTT CGTTTGGTTT 
TTTAGTTTAA GTCTAGGCGC AAAATATTTA AGCCCTGTCT TTAAAAAGCC AAAGGCTTGG 
TGTTACTTAG ATAGATTTAT TTGTATCACC ATGTGGTCAA TCGCTGCAGC GTTAATCTAT 
CCATATGTTG GATAA
 
Protein sequence
MQTAFIQGMG IGGSLIMAVG AQNAFVLKQG LRRSHSLPIA AICSFIDAIM ITAGVAGLGH 
LILAFPLIKD IASIGGALFL IIYGYGALKS SFSESRMESE EALAADSLKK AVLTTLAISL 
LNPHLYLDTV VLLGSISVQF EGTEKQWFGA GAVLASFVWF FSLSLGAKYL SPVFKKPKAW 
CYLDRFICIT MWSIAAALIY PYVG