Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_1899 |
Symbol | |
ID | 5662293 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | - |
Start bp | 2309986 |
End bp | 2311365 |
Gene Length | 1380 bp |
Protein Length | 459 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 641236488 |
Product | integrase family protein |
Protein accession | YP_001501756 |
Protein GI | 157961722 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.430371 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCTCTA TTATTCAAAC AAAGCTTAAC TTAGGCTCAC TGCCATCGTT TGATGGGGAG TTACTGGATA TTGCAGGCGA GTATCAGATC CGAAATATTA ACCACCAACG CCACCATGAG GTCGATAAAT TCCCATTACT ATTCAGTGAT ACACGATTAA AAGATTGTTT AGAAATAAAC CTGTTCCTTG AGTATCGTTA CAAAGGCAAG TTTCTTCGCC CCTCTAGAGG AGGTCATAAG AACCTCTTAG GAGGTGTAAC GGTAAAAACA ATTAAAAGCA TTGCCAACTC GCTTAAAGTT TTTCTGGTGT GGCTAGAGGC CGCAGGATTA GAGTGGAAAG ACCTATATGC TGTCTCAGCA TCAGAGAAAG CAAAAGAGTG GTTACTGCCT TATCGCTTTC GCACCCACTT GATTGACCGA ATCAAGAATA ATGAGCTATC GCTCGATACC GCAAATTTGT ACATATCTCA TGTTAGACAA TTGTATGAAT GGGCTTGGCG AACACGTCGA ATTGAAAAAC TGCCATTTAA ATATACCGAC AAGGTGATTA GGAAAAAACG CTCTAACTCA GAGTTTGATT TGATATTCGC ATCCTTTAGT TATGACAGAG GGATGGTAGT TCAAACTAAT GACTTAACTA TTCCTAAAAA GCATCGACAA AAGAAAATGG TGTTGAACGA TGGACTTTCC CCGTATAGCC AAAAAGAGTT AAAGGATTTC TACTCTACAA ACCACATGCA ATCAGAGTCC CGCAGACTAT GGGCAGATTT AGCGTTGTTG TGTGGGTTAC GAGCTTTTGA AGTGGTACTT TTAAAGGAGT CTGAAATTGT TGATACAGCC TTGGACGATA CCAAAGTTTA CAGCGTTGAT GTACTTGGCA AGTTTAATAA GCATAGACAG ATACTTGTAC CACGTTCTTT GATGTCGAGA CTCTGGAACT ACAGGAACTC ACCAGAAAGA CTAAAGCGCT CTGCCAAATG GGGGGCAAAC CAGAATGCAG AAATAGACAA ACCTCTTTTC ATTAACCGTT CTGGCAATAT CCTAAATGAA GGGTCGATCA CTAATATTAC GTCCAACGCT GCGAAAGAAT TACTCACCAG TAAAATTGAG TTTTATAGGT CGTTTCATGA TCTGCGCTCA ACTTTTGCTA CCTCATTAGC GCGTTTTTTG TTGGAGAAAG ATTTACCCCT TGGATTCATC CAATACAGGC TTATGACTTT ATTGGGTCAC TCTAAGTTTT CGACTACTGA GAAATACATC GATCTGGCAC GAACCATTAC TTATGACAAG CGCATGAAAT CTTGGGTTGA GGATGTGTTT GGAGGTTTAG AGCAAGAGTT AAGCGTTGAA GTAACTGAGC TAGAGATAGG AGTTCGATAG
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Protein sequence | MISIIQTKLN LGSLPSFDGE LLDIAGEYQI RNINHQRHHE VDKFPLLFSD TRLKDCLEIN LFLEYRYKGK FLRPSRGGHK NLLGGVTVKT IKSIANSLKV FLVWLEAAGL EWKDLYAVSA SEKAKEWLLP YRFRTHLIDR IKNNELSLDT ANLYISHVRQ LYEWAWRTRR IEKLPFKYTD KVIRKKRSNS EFDLIFASFS YDRGMVVQTN DLTIPKKHRQ KKMVLNDGLS PYSQKELKDF YSTNHMQSES RRLWADLALL CGLRAFEVVL LKESEIVDTA LDDTKVYSVD VLGKFNKHRQ ILVPRSLMSR LWNYRNSPER LKRSAKWGAN QNAEIDKPLF INRSGNILNE GSITNITSNA AKELLTSKIE FYRSFHDLRS TFATSLARFL LEKDLPLGFI QYRLMTLLGH SKFSTTEKYI DLARTITYDK RMKSWVEDVF GGLEQELSVE VTELEIGVR
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