| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1862 |
|---|
| Symbol | |
|---|
| ID | 5662257 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 2268123 |
|---|
| End bp | 2270522 |
|---|
| Gene Length | 2400 bp |
|---|
| Protein Length | 799 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641236452 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_001501720 |
|---|
| Protein GI | 157961686 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGCTTA GATCTCGCCG TTGCACAAAA CCTCGCTTTA GTTCTGTATG GACACTTCTA
CTCCCCATTT TTACAGTGCC AACGGCTATT GCCCAGAGCG AAACTGAGGT CCCTAAACCC
AGTAGTAAAG GGACAATTGA GGTGATTGAG GTTACGGCCC GTCGTTCGGT TGAGAGCCTG
CAGGCCACTC CTATTTCGCT AACGGCGCTG GACACTGAGG CTATTGAGCA AAAAGGGATC
CGCTCGGTGG TGGATCTAAC GGGTTACGTG CCTACATTAC AAATTCAAGC CAATGCATCT
GGTTCAAATG ACGTCACATT ATCTATGCGT GGCTTGCGAG TTTCAGACTC TGTATCAACG
GCAGAATCTC CCATCGGCGT GTACCTCGAC GGCGCTATTT TGCCGCGGAT ATCTGGTGCC
ATGATGGATC TACTAGAGCT CGAGCGAGTA GAGGTGCTGC GCGGCCCTCA AGGCTCACTC
TATGGTCGCA ACTCGACGGG AGGGGCAATT AATATGATCA GTAAAAAGCC CTATCTTGAT
TTTGGCTTAA CCCAAGACTT TACTGTTGGC AGTGAGTCTT TGTTTATTAC TCAGACCCGA
ATCGACTCGG GAGAACTCGG TGAGAGTGGT CTGACTGCAG CATTCTCCTT TCGTAGCGCT
AACCGAGATG GTCATATCGA TATTATCGAC ACACCGAACG ACAGAGATGG CGGCGCATAT
GATGATAAAG CCTATCGATT AGCAATAAAC TGGCTGGCCA ATGACTATTT CGAAGTTGAT
TACAGCTATA ACCGTATTGA ATCTGAAGGA ACCAAGACTC CTTCACACCT AGCTGCTGTT
AGTTACGAGG CTGGTGAAGT GGCTCAAGTT AATGGTGAAC CATTAGAGCT GCAAGCGAGC
CGTGCCGATT CCCTTAACTT GAACAATAAT GGCTATGGCA CCAGCAATAC CACACTGCAC
ACCTTGGCAA TTAACTGGGA CATGAGTGAT AACTATAGTC TAAGGGCGGT GACAGGAATT
CGTGACTGGC AGGGAGAAGA GTTCGGTAAT GATTTAGATG GTAATGGTCT GTTGCAGGCC
AATGTTATTA ACCCAGTTAC GTTCGAAACC TCGATACAAG CCTTTCCAGG ATTATTCTAT
TCACCACTCA ATAAGCGTAA ACAACAGCAT TTCTCCCAAG AGTTACAGCT GCTTGGCACA
ATTACTGATG ATTTGGACTT TGTATTTGGC CTGTTCTATT TCGACGAGGA CTTTGACGAG
TACAATCCAA CCAACTTCTA TCTTCCTCGC GCCGTTATTG GCCCAATGTT TGGTAACCCT
AATGCTGATT TCGGCATGCT GGCCGCCAAT ATTATGGATT TTAATGGGAG TTCTAAATCA
AAGGCCGCAT TTAGTCAGTT TAATTGGAGG CTCAATCAAG ACTTGCGCCT AACTGCAGGG
ATTCGCTATA CCCAAGATGA AAAGTACTTA TATCAAACCG TGGTCGACTT TAACGACCCA
TCGGGTTTTG TCAGTGGCGG TGATAGCCGT GATTACAGTA ACTTTAACTG GAATATCAGC
GCCGATTATC AATTTAGCGA GACAAGTTTT GGTTATGCTA GAGTCGCTAC TGGCTATAAG
TCTGGTGGCT TAACTGCCCG CAGTGCCGGA ACTGGAAATC TGTTTTTGGA CGATTTTGAT
GAGGAGACCT TAATAGGTTA TGAGGTTGGC ATAAAGAACG ATTTATTTGA TAAGCGCTTA
CGACTTAATA CCAATGTTTT CTATACCCAA TATGATGATT TTCAAATCGA TTCATTTCTA
TTTGGTAGCG GCGGCGCAAC CTCACTTATC GAAAATGCCG GTGATGCCGA TCAATTGGGC
GTAGAAGTTG AATTTGTTAT CGCAGCGACT GAAGATCTTC GTATCGATGG CAATATCGCC
TGGTTAGATA TGGATTTTCA AAAATATGAA GTGTTAAACC GTAAAACCAA TCAACTGGTC
GATGTGGCTG AAGAAGCTGA GTTCCCCTAT GTTTCAGAGA TCACTGCGGC GCTGGGTGTT
CAATACTTAT TGGCCGAGTT ATGGGGCGGA GAGTTGTCAC TGCGCGCCGA TGCGCGTTAT
ATTGGCAAGC GAGTATTTAC TCAGGTAGAG GTTGTTCCCG GACCGACTCC TGATTTAGAC
GATTATCATA GCCCATTTAT GCATGACATT GCCGCTGATG CTTATACCTT AGTTGACCTG
CGAGCTAGCT TAGATGGCGT CGATACAGGC TTTGGCGAAT TGAGGCTATC AGCCTGGATG
CGCAATACAC TAGATGAAGA GTACATTACT CAGGGCATTG ACTTTGGTAG CTTAGGTATA
GGCAATGTTA TTTACGGCGA CCCCAGAACT ATTGGCTTAG ATATGCGATT ACAATTCTAA
|
|---|
| Protein sequence | MTLRSRRCTK PRFSSVWTLL LPIFTVPTAI AQSETEVPKP SSKGTIEVIE VTARRSVESL
QATPISLTAL DTEAIEQKGI RSVVDLTGYV PTLQIQANAS GSNDVTLSMR GLRVSDSVST
AESPIGVYLD GAILPRISGA MMDLLELERV EVLRGPQGSL YGRNSTGGAI NMISKKPYLD
FGLTQDFTVG SESLFITQTR IDSGELGESG LTAAFSFRSA NRDGHIDIID TPNDRDGGAY
DDKAYRLAIN WLANDYFEVD YSYNRIESEG TKTPSHLAAV SYEAGEVAQV NGEPLELQAS
RADSLNLNNN GYGTSNTTLH TLAINWDMSD NYSLRAVTGI RDWQGEEFGN DLDGNGLLQA
NVINPVTFET SIQAFPGLFY SPLNKRKQQH FSQELQLLGT ITDDLDFVFG LFYFDEDFDE
YNPTNFYLPR AVIGPMFGNP NADFGMLAAN IMDFNGSSKS KAAFSQFNWR LNQDLRLTAG
IRYTQDEKYL YQTVVDFNDP SGFVSGGDSR DYSNFNWNIS ADYQFSETSF GYARVATGYK
SGGLTARSAG TGNLFLDDFD EETLIGYEVG IKNDLFDKRL RLNTNVFYTQ YDDFQIDSFL
FGSGGATSLI ENAGDADQLG VEVEFVIAAT EDLRIDGNIA WLDMDFQKYE VLNRKTNQLV
DVAEEAEFPY VSEITAALGV QYLLAELWGG ELSLRADARY IGKRVFTQVE VVPGPTPDLD
DYHSPFMHDI AADAYTLVDL RASLDGVDTG FGELRLSAWM RNTLDEEYIT QGIDFGSLGI
GNVIYGDPRT IGLDMRLQF
|
|---|
| |