Gene Spea_1837 details

Gene Information

• Locus tag: Spea_1837
• ID: 5662232
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella pealeana ATCC 700345
• Kingdom: Bacteria
• Replicon accession: NC_009901
• Strand: +
• Start bp: 2235133
• End bp: 2235819
• Gene Length: 687 bp
• Protein Length: 228 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 641236427
• Product: ABC transporter related
• Protein accession: YP_001501695
• Protein GI: 157961661
• COG category: [V] Defense mechanisms
• COG ID: [COG1136] ABC-type antimicrobial peptide transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.000603885
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTAAAG TTCATCAATT AAAAAAAGAA TATCCCATGG GAGACAGCTG CGTGAAAGCG 
CTCAATGGGG TAAGCTTCTC TATCGCGAGA AATGAGTTTG TTGCCATCAT GGGGCCATCT 
GGGTCAGGGA AGTCAACATT AATGAACATC ATTGGCTGTC TAGACAAGCC GACGTCGGGT 
AGCTATAGCC TGAACGAACA AGCGGTGGCC GAGTTAGATG ATGATGCCTT GTCTGCTGTA 
CGTAACAAGG AGATTGGTTT TGTGTTTCAA AGCTTCCACT TGTTACCCCG TTTATCTGCT 
TTGCAAAATG TGTTGTTGCC CTTAAGGTTC TCAGCTTCAC CTGTTCAAGA TACCGATTAT 
GCCCATGAGT TACTCAAGCG AGTCGGTCTC GATACTCGCC ATGATCATAG ACCCAATCAG 
TTATCGGGTG GACAAAGACA GCGTGTGGCC ATTGCTCGCT CTTTAGTGAA TCGACCTGCA 
ATCCTATTAG CCGATGAGCC CACTGGCGCG CTAGACAGTA AAACCTCGGT CGAGATCATG 
GCGCTGTTTA CTGAGTTACA TAAAGCCGGA CAAACCATCA TCTTAGTGAC TCATGAAGAA 
GAGGTTGCCG CTTATGCCCA GCGTATTATT CGTATGCGCG ATGGTGACAT CGTCGAGATA 
GAAGAAAGAG GTGAAAATGC CGCTTAA 

 

Protein sequence

MIKVHQLKKE YPMGDSCVKA LNGVSFSIAR NEFVAIMGPS GSGKSTLMNI IGCLDKPTSG 
SYSLNEQAVA ELDDDALSAV RNKEIGFVFQ SFHLLPRLSA LQNVLLPLRF SASPVQDTDY 
AHELLKRVGL DTRHDHRPNQ LSGGQRQRVA IARSLVNRPA ILLADEPTGA LDSKTSVEIM 
ALFTELHKAG QTIILVTHEE EVAAYAQRII RMRDGDIVEI EERGENAA