Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_1805 |
Symbol | |
ID | 5662200 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 2204080 |
End bp | 2204943 |
Gene Length | 864 bp |
Protein Length | 287 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641236395 |
Product | heat shock protein HtpX |
Protein accession | YP_001501663 |
Protein GI | 157961629 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0501] Zn-dependent protease with chaperone function |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.00990556 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAGCGTA TATTTTTACT GATTGCCACT AACATGGCGA TCTTATTGGT GGCATCGATT GTGATGTCAA TTTTAGGTGT TAACACCTCA ACCATGGGCG GCTTACTTGT GTTTGCTGCA ATATTTGGTT TCGGTGGTGC ATTTATCAGC TTGGCAATCT CAAAGTGGAT GGCTAAGAAG ACCATGGGTT GTGAGGTTAT TACTACGCCA CGTGATAACA CCGAGCGTTG GTTAGTTGAG ACGGTTGCCC GTCAAGCTGA GCAAGCTGGG ATTAAGATGC CAGAAGTCGC GATTTACCAA TCGCCAGAAC TGAACGCATT TGCAACGGGT CCAAGCAAGG ACAACTCGTT AGTCGCTGTG AGTAGCGGTT TACTTTATGG CATGAATCAA GATGAGATTG AAGCGGTACT TGCTCACGAA GTTAGTCACG TTGCCAACGG TGATATGGTG ACGCTGACGC TTATTCAAGG CGTGGTGAAC ACCTTCGTTA TTTTCGCAGC ACGTGTTGTT GCGGGTATCA TTGATAACTT TGTTTCAAGC AATGATGAAG AGGGCGAAGG CCTAGGCATG TTCGCTTATA TGGCAGTCGT GTTCGTACTA GATATGCTAT TCGGTATCTT AGCCTCAATG ATTGTTGCTT ACTTCTCTCG TATTCGCGAA TACAGAGCCG ATGAAGGCGC TGCAAAACTT GCTGGTAAAG AGAAGATGAT TGCTGCGCTG GATAGATTAC GTCAAGGCCC TGAAACAGGT GCGATGCCTG CATCTATGTC AGCATTGGGT ATTAACGGTA AGAAATCTAT GGCGGAATTG ATGATGAGTC ATCCACCATT AGAAAAGCGT ATCGAAGCGT TAAGAGCTCA CTAA
|
Protein sequence | MKRIFLLIAT NMAILLVASI VMSILGVNTS TMGGLLVFAA IFGFGGAFIS LAISKWMAKK TMGCEVITTP RDNTERWLVE TVARQAEQAG IKMPEVAIYQ SPELNAFATG PSKDNSLVAV SSGLLYGMNQ DEIEAVLAHE VSHVANGDMV TLTLIQGVVN TFVIFAARVV AGIIDNFVSS NDEEGEGLGM FAYMAVVFVL DMLFGILASM IVAYFSRIRE YRADEGAAKL AGKEKMIAAL DRLRQGPETG AMPASMSALG INGKKSMAEL MMSHPPLEKR IEALRAH
|
| |