| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1789 |
|---|
| Symbol | |
|---|
| ID | 5662184 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 2185482 |
|---|
| End bp | 2186678 |
|---|
| Gene Length | 1197 bp |
|---|
| Protein Length | 398 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641236379 |
|---|
| Product | 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase |
|---|
| Protein accession | YP_001501647 |
|---|
| Protein GI | 157961613 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes |
|---|
| TIGRFAM ID | [TIGR01347] 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.752877 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTATCG AAATTAAGGT ACCCGTTCTG CCAGAATCAG TTGCAGATGC AACCATTGCT
ACTTGGCATG TTCAAGCTGG CGAGCAAGTT TCTCGTGATC AAATCCTTGT TGATATTGAA
ACTGATAAAG TCGTACTTGA AGTTGTTGCA CCAGAAGATG GACAAGTTGC TGAGTTTCTA
GCTCAGGAAG GTGACACAGT TCTTGGTGAA GCAGTGATTG CTAGCTTTAT TGCTGGCGCA
GTTGCAGGTC AAGAAGTCAC TAAAGCCCAA GCGGAAGCGG CAACGCCTGC AAGCGATGCA
TCTGACGAGT CAAACGACGC ACTAAGCCCT TCAGTTCGCC GTCTTATCGC AGAGCATAAT
GTTGATGCCA ATGCGATTAA TGGCACGGGT GTTGGCGGAC GCATCACTAA AGAAGACGTT
GAAGCGTTCG TTAAGAACAA GCCTGCAGCA GCGCCAGCAA GTGCTTCAGC ACCTGCTGCA
GTGGCGCCAT TAGCCGAGCG TAGCGAAAAG CGTGTGCCTA TGACACGTCT TCGTAAAACG
ATTGCTAATC GTCTGCTTGA AGCAAAAAAC TCTACGGCTA TGCTAACAAC GTTTAACGAA
GTTAACATGA AGCCAATTAT GGATATCCGT AAGCAATATC AAGAGGTTTT TGAGAAGCGC
CACGGTATTC GTCTAGGTTT CATGTCTTTC TATGTTAAGG CTGTTACTGA AGCGCTTAAG
CGTTTCCCTG AAGTGAATGC ATCAATCGAT GGTGATGACA TTGTTTATCA CAACTACTTT
GATATCAGCA TCGCAGTGTC GACTCCTCGT GGCCTAGTGA CACCAGTTTT GCGTGACACT
GACAAGATGA GCCTTGCCGA TATCGAGCGT AATGTTCGTG AACTAGCCAT TAAAGGTCGT
GACGGTAAGT TAACTGTTGA TGACATGACT GGCGGTAACT TCACCGTGAC TAACGGTGGT
GTATTTGGCT CATTGATGTC AACGCCAATT TTGAATTTGC CACAGAGTGC GATCTTAGGC
ATGCATGCCA TCAAAGATCG CCCTATGGCA GTAAATGGTC AGGTTGAAAT CCTGCCTATG
ATGTACCTCG CACTTTCTTA CGATCACCGT ATTGTAGATG GACGTGAATC AGTTGGTTAC
TTGGTTGCTA TTAAAGACTT CCTTGAAGAT CCAACTCGTC TGCTTCTTGA CCTATAA
|
|---|
| Protein sequence | MSIEIKVPVL PESVADATIA TWHVQAGEQV SRDQILVDIE TDKVVLEVVA PEDGQVAEFL
AQEGDTVLGE AVIASFIAGA VAGQEVTKAQ AEAATPASDA SDESNDALSP SVRRLIAEHN
VDANAINGTG VGGRITKEDV EAFVKNKPAA APASASAPAA VAPLAERSEK RVPMTRLRKT
IANRLLEAKN STAMLTTFNE VNMKPIMDIR KQYQEVFEKR HGIRLGFMSF YVKAVTEALK
RFPEVNASID GDDIVYHNYF DISIAVSTPR GLVTPVLRDT DKMSLADIER NVRELAIKGR
DGKLTVDDMT GGNFTVTNGG VFGSLMSTPI LNLPQSAILG MHAIKDRPMA VNGQVEILPM
MYLALSYDHR IVDGRESVGY LVAIKDFLED PTRLLLDL
|
|---|
| |