| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1786 |
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| Symbol | sdhA |
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| ID | 5662181 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 2179933 |
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| End bp | 2181699 |
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| Gene Length | 1767 bp |
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| Protein Length | 588 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641236376 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_001501644 |
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| Protein GI | 157961610 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00696319 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGGTATTC CAGTTCGCGA ATTTGACGCG GTTGTAATCG GAGCCGGTGG CGCGGGTATG
CGTGCCGCTC TACAGATTTC AAAAGAAGGT AAGAGCTGCG CGCTCTTATC TAAAGTTTTC
CCAACTCGTT CTCATACCGT ATCTGCACAG GGTGGTATTA CCGTAGCACT GGGTAATGCA
CACGAAGATC ACTGGGAACA GCACATGTAC GATACCGTGA AAGGTTCCGA TTTTATCGGT
GACCAAGAAG CGATTGAGTT TATGTGTAAG ACAGGGCCTG AAGCGGTAAT CGAGCTTGAG
CACATGGGTC TACCATTCTC ACGTTTCGAA AACGGCAAGA TTTACCAGCG TCCTTTCGGT
GGTCAGTCTA AAAACTTCGG TGGTGAGCAA GCGGCGCGTA CAGCGGCTGC TGCCGACCGT
ACAGGTCACG CACTACTACA TTGTCTATAT CAGCAAAACG TTAAACATAA GACTGAAGTC
TTTTCTGAGT GGTATGCACT CGACTTAGTC AAAAATGAAG ACGGCGTGAT TGTGGGTTGT
ACGGCAATCG AAATTGAAAC CGGCGAAATT GTTTATTTCA AAGCGAAAGC AACAATCTTG
GCAACCGGTG GCGCAGGGCG CATCTACGCT TCAACCACTA ACGCTCACAT TAACACTGGC
GACGGTGTTG GTATGGCGAT GCGTGCCGGC GTTCAGATGC AAGACATGGA AATGTGGCAG
TTCCACCCAA CGGGTATCGC TGGCGCAGGT GTTTTGGTGA CTGAAGGTTG TCGTGGTGAA
GGTGGTTACC TGCTAAACAA AGATGGCGAA CGCTTTATGG AGCGCTATGC ACCGAATGCG
AAAGACTTGG CATCTCGTGA TGTAGTCGCA CGTTCTATGA TGACTGAAAT TCGCGAAGGT
CGTGGTCTCG ATGGTCCATT AGGTCCGCAC TGTCTTCTTA AGCTAGATCA CTTAGGTAAA
GAAACCCTAG AAGCGCGCCT TCCAGGTGTT TGTGAATTGT CGCGTACATT CGCGCATATC
GATCCCGCCG ATGGTCCAAT CCCAGTTCTT CCAACTTGTC ACTACATGAT GGGTGGTCTA
CCTGCAAAAG TGAGTGGTCA GGTTGTACGT CAAAATACAG ATGGCAGTGA AGAAGAAATT
ACCGGTCTAT TTGCAGTTGG TGAAATTGCG TGCGTTTCGG TACACGGAGC GAACCGATTG
GGTGGTAACT CATTGTTAGA TCTTGTAGTA TTTGGTCGAG CAGCGGGTCA ACATTTAGGT
AAAGCGTTAG ATGAAACGCC TACACCAAAA GAAGCTAGCC AGGCTGATAT CGATGCTTCT
CTTGCGCGTT TGAACCGCTG GGAAAGCAAC AAAGATGGCG AAGACCCTGC AGTGATCCGT
AAAGACCTAC AGCTTTGTAT GCAGCTGAAC TTCTCAGTAT TTAGAAGTGG CGATGCGATG
GCTGAAGGCC TTAAAGAGCT TAAGGTGATC CGTGAACGTT TGGCTAACGC CAAGCTTTCA
GATAACTCAA CAGAATTTAA TACTCAGCGT ATTGAGTGTT TAGAGTTAGA TAACTTGATG
GCAACCGCAA TTGCAACAGC TACGGCGGCC AATTTCCGTA CCGAAAGTCG TGGTGCTCAC
TCTCGTGAAG ATTACCTTGA GCGAGATGAT GAAAACTGGC TATGTCATAG TATCTATGAC
CCAGTAACCG AGCTAATGAC TAAGCGTGAT GTGAACATGC AGCCTAAGCT TCGTGACGCA
TTCCCGCCTA TCAAACGTAC TTACTAA
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| Protein sequence | MGIPVREFDA VVIGAGGAGM RAALQISKEG KSCALLSKVF PTRSHTVSAQ GGITVALGNA
HEDHWEQHMY DTVKGSDFIG DQEAIEFMCK TGPEAVIELE HMGLPFSRFE NGKIYQRPFG
GQSKNFGGEQ AARTAAAADR TGHALLHCLY QQNVKHKTEV FSEWYALDLV KNEDGVIVGC
TAIEIETGEI VYFKAKATIL ATGGAGRIYA STTNAHINTG DGVGMAMRAG VQMQDMEMWQ
FHPTGIAGAG VLVTEGCRGE GGYLLNKDGE RFMERYAPNA KDLASRDVVA RSMMTEIREG
RGLDGPLGPH CLLKLDHLGK ETLEARLPGV CELSRTFAHI DPADGPIPVL PTCHYMMGGL
PAKVSGQVVR QNTDGSEEEI TGLFAVGEIA CVSVHGANRL GGNSLLDLVV FGRAAGQHLG
KALDETPTPK EASQADIDAS LARLNRWESN KDGEDPAVIR KDLQLCMQLN FSVFRSGDAM
AEGLKELKVI RERLANAKLS DNSTEFNTQR IECLELDNLM ATAIATATAA NFRTESRGAH
SREDYLERDD ENWLCHSIYD PVTELMTKRD VNMQPKLRDA FPPIKRTY
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