Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_1752 |
Symbol | |
ID | 5662147 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 2129463 |
End bp | 2131217 |
Gene Length | 1755 bp |
Protein Length | 584 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641236341 |
Product | poly(R)-hydroxyalkanoic acid synthase, class I |
Protein accession | YP_001501610 |
Protein GI | 157961576 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG3243] Poly(3-hydroxyalkanoate) synthetase |
TIGRFAM ID | [TIGR01838] poly(R)-hydroxyalkanoic acid synthase, class I |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.995391 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGAAAGTA AATCGCCCTT TCAAGACGCG ATCGACAATG CAATGCAATT TGGCCAAGCA TGGATGGATA GCTTCGGGCA GTCGGCTCAA TCCTCTATCG TAGAAACACA AGCGGAAGAT TGGGCACAAT GGATGCGCTC ATCGGTTGAA CACCCTGTTA ACTCTATTGA ACAACAAATG GATTGGTGGG GGCAACAAGT CAATCTATTT AACGATTGCA TTATGAGCAG TCCCGCAGAA AAAGAGACAG ATCGACGATT TAAAGACCCT GCGTGGAATG AACAGGCACT TTATAAATAC ATCAAAGAAA GTTATAAGTT GGCTTGTAAT AATATTCAAG CATCAATCAA TAACACCGAA GGGCTAGATG ACGAAACTCG TCAGCGATTA TCCTTTTTTT CTCGCCAGTA TCTTAATGCT ATGTCACCGA GCAATTTTGT TGCCACCAAC CCTGAAATAA TGAAGCTAAC CATTGAGAGT AAAGGCCAAA ACCTAATTAA AGGGCTAGAG CAACTTCAGC AAGATTTAGA GCAAAGCGTC GATACCTTGA ATATTCGCAT GACAGATAAA ACGGCTTTCA CTGTAGGAAA AAATATTGCC ACAACTCCTG GTAAGGTTGT CTTTAAAAAC GATCTGTTTG AACTTATTCA ATATCAAGCC ACAACGGAGC AAGTGTACAA ACGACCTCTG CTTGTTGTAC CGCCATTTGT GAACAAATTT TATATCATGG ATCTAAGCCC TGAGCGTTCT TACACGCAAT GGCTAGTGAG CCAAGGGCAT ACAGTATTTA TGATCTCTTG GGTTAACCCC AATGCCGAGA TGGCAGCAAC TGATTTTGGT GACTACGTTA CTCAGGGGGT TATCCTTGCG TTAGATGCAA TAGAAGCTGA AACCGGTGAA CGTGAAGTCA ACGGTATTGG TTATTGTATC GGTGGGACAC TGTTAACTGC AGCAATGGCT TATTTAGCCG GCAAACGCCG CAAGCAAAGA GTCAAATCAG CAACCTTACT CACCACCATT CTAGACTTTG GCCAACCTGG CGAACTTGGT GTGTTCATCA ACGACCCACT GATTAGCAGT ATCGAAGCGC AGAATAATGC TCGTGGCTAC ATGGATGGAC GACAGATGGC TGTGTCATTT AGCCTGTTAA GGGAAAATAG CCTGTATTGG AATTACTATG TGACCAACTA CCTTAAAGGC GAAAGTCCAG TGGCGTTCGA TCTACTTCAT TGGAATTGTG ACAATACCAA CATAACTGCT GCGACACACA ATCAGATATT ACGCCAAATG TACCTTGAAA ATAAGCTGAA GGAACCTGGT GGCATCACAG TTGATGGCGT TAAAGTCGAC CTGAGTAAAG TTAAGTCTCC GTGCTATTTC CTCTCCGCTA TTGAAGATCA TATTGCAGTC TGGGAAGGCA CTTTTCGTGG TACAGAGTTA CTCAATGGCG ATAACACCTT TGTGCTGGCC GAAAGTGGCC ATATTGCAGG ACCCATGAAC CCGCCAAGTT CTAATAAATA TGGTTTTTGG ACCAATAGCG ATAATGCGCA GAGCCCGGCG AAATGGCTGG CTGAGGCGGA TAATCATTCT GGTTCTTGGT GGCCCCACTG GCAATCTTGG GTCGATGAAC GAAATTTCTC TGACAAAATA GCAGCACGTT CATTAACTGG GAAGTTAGAT GCTCCGGGGG AGTACGTAAA ACAACGAATC GAAGATGTGA TAGCACCAAA AGAGGAGGTA CGCCATGACA CTTAA
|
Protein sequence | MESKSPFQDA IDNAMQFGQA WMDSFGQSAQ SSIVETQAED WAQWMRSSVE HPVNSIEQQM DWWGQQVNLF NDCIMSSPAE KETDRRFKDP AWNEQALYKY IKESYKLACN NIQASINNTE GLDDETRQRL SFFSRQYLNA MSPSNFVATN PEIMKLTIES KGQNLIKGLE QLQQDLEQSV DTLNIRMTDK TAFTVGKNIA TTPGKVVFKN DLFELIQYQA TTEQVYKRPL LVVPPFVNKF YIMDLSPERS YTQWLVSQGH TVFMISWVNP NAEMAATDFG DYVTQGVILA LDAIEAETGE REVNGIGYCI GGTLLTAAMA YLAGKRRKQR VKSATLLTTI LDFGQPGELG VFINDPLISS IEAQNNARGY MDGRQMAVSF SLLRENSLYW NYYVTNYLKG ESPVAFDLLH WNCDNTNITA ATHNQILRQM YLENKLKEPG GITVDGVKVD LSKVKSPCYF LSAIEDHIAV WEGTFRGTEL LNGDNTFVLA ESGHIAGPMN PPSSNKYGFW TNSDNAQSPA KWLAEADNHS GSWWPHWQSW VDERNFSDKI AARSLTGKLD APGEYVKQRI EDVIAPKEEV RHDT
|
| |