| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1708 |
|---|
| Symbol | |
|---|
| ID | 5662104 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 2074870 |
|---|
| End bp | 2076399 |
|---|
| Gene Length | 1530 bp |
|---|
| Protein Length | 509 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641236295 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001501567 |
|---|
| Protein GI | 157961533 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.718334 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATACAG ACTATTTAAT AGTCGGTAGT GGACTATCCG CATTAGTGTT CGCCGCGCTG
AGTGCAAAGT CTGGTAAGAA GGTCGTGATA CTAGAGGCAC ATGAATACCC CGGCGGATTT
GGCCATACTT TCCCTATCGC AAAGCATTAC AAATTCAATG CCCAGCTTCA CTACGTCTGG
AATTGTGGTG AAGGTGATAC AGTCAACAAC GTTCTTAAAA AGCTGCAATT AGAGGAACAG
GTCACTTTCG AATCATTCGA TCCTCAAGGC TTCGATCATA TGCGTATGCC TGAGTATCAA
CTCGATATTC CCTATGACTC CGATCTACTG CTTTCAAGGC TTAAGGAGCT GTTTCCTAAA
CATTCTAAGC AATGCACCAC CTTCATCAAT GAGGTCAGGC GAACGGCAAA TGGACTCGGC
GTGCTGTCCG GTGACGAGCG ATTTAAAAAT ATCCTTAAAA ATCTAGAACA AGCCGCAACC
GCATACCGGA ATATCAAGTT TACTCTGCAG CAGATGTTTG ACAAACATAA GCTGCCACTG
GAAGCACAAA CATTACTAGC ATTGCAGTGG CCAGATTTTT TACTTCCCCC TAATCAGCTT
TCATTTTGTG CCTGGGTGCT ACTGTTTACC GGTTATCAGA GGGGAGCTTA TTACCCCACT
CATCATTTCG AACATGTGAT AACAAGCTTA GTCGACACTA TTGAAGCTAA CGACGGACAG
ATCATCTACC AAACTCAGGT CGACAATTTT GTTTTGGAGA ATGATCGAGT AGTGGCAGTT
GAAGCGACAG ATCTGACAAC CAATATCACG CTGCGCTATG ACGCAAAGTG CACTATTTGT
AATATGGATC CTAAAAAAGC TGCCCACCTA ATCGGCATAG AAAAGTTCTC TTTAAAACTT
AGAAGACAAT TGGACTATGA CTATTCAGCT TCTAACTTTA TGGCCTACTG CGCCGTTAAA
GATATTAATC TTGAGGACTA CGGCTTTGGC AGATGGAATA TTTTTCACTC TAATCATAAG
GATCTCAATC TAGCCTTCGA TGCCATGTAT AACCAACATG ATTACTCTGC CCCAAGTTTT
GCAATGTCCA CCCCCGGATT TTTAACCCAA GATTCTTCCG ATAGACCAGA GGGTCATCAG
ATCATCGAGT TCGTTACTGT CGCAGATTAC CAGTATTTTA AGGCGTTAAA GTCGCGGGAT
CCGAGGGCCT ATAGACAGAA GAAAAGAGCA ATATTAGATG CTATTGTGAA TACTGTAGAG
GAGCATTACG TTCCAAACTT TCGGGAACAC TTAACCTATA AGAGCACGGG TAGCCCGACG
ACAAATGAAG ACTTCTGCTG GTGCCCAGAA GGTAACTCAT ATGGTTCAGC GATGACTCCC
AGTAATTTCA ATCTATGGCG TTTAAATCAT AACAGCTCGC TTAAAGGGCT CTACTTTTGT
AACGCCTCAT CAGGATACGC AGGCTTTGCA GGTACATTTT GGACCGGAGC TAAGCTATAC
CAGCACCTGA GCGGAGAGCG TATTCTATAA
|
|---|
| Protein sequence | MDTDYLIVGS GLSALVFAAL SAKSGKKVVI LEAHEYPGGF GHTFPIAKHY KFNAQLHYVW
NCGEGDTVNN VLKKLQLEEQ VTFESFDPQG FDHMRMPEYQ LDIPYDSDLL LSRLKELFPK
HSKQCTTFIN EVRRTANGLG VLSGDERFKN ILKNLEQAAT AYRNIKFTLQ QMFDKHKLPL
EAQTLLALQW PDFLLPPNQL SFCAWVLLFT GYQRGAYYPT HHFEHVITSL VDTIEANDGQ
IIYQTQVDNF VLENDRVVAV EATDLTTNIT LRYDAKCTIC NMDPKKAAHL IGIEKFSLKL
RRQLDYDYSA SNFMAYCAVK DINLEDYGFG RWNIFHSNHK DLNLAFDAMY NQHDYSAPSF
AMSTPGFLTQ DSSDRPEGHQ IIEFVTVADY QYFKALKSRD PRAYRQKKRA ILDAIVNTVE
EHYVPNFREH LTYKSTGSPT TNEDFCWCPE GNSYGSAMTP SNFNLWRLNH NSSLKGLYFC
NASSGYAGFA GTFWTGAKLY QHLSGERIL
|
|---|
| |