| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1689 |
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| Symbol | |
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| ID | 5662085 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 2052358 |
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| End bp | 2054364 |
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| Gene Length | 2007 bp |
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| Protein Length | 668 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641236276 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_001501548 |
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| Protein GI | 157961514 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000649064 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAGCTA TTCAAAACGA AATTGCTCAG CTAACTGCTG AACTCAATCA ACATAACTAT
CGCTATTATG TCGATGACAG TCCTTCTATT CCCGATGCCG AGTACGACCG TTTATTGAAT
AGGCTTAAAG CCTTAGAGAC TGAGCATCCA GAGTTTTGTC GACCTGACTC GCCAACACAA
AGAGTTGGAG GCGAGGCATT AGCTAAATTC GAGCAAATTA AACACTTAAA GCCAATGTTG
AGCTTAGATA ACGTGTTTGA TGAGCAAGAG TTCACTGCAT TCAATCAACG GATCGTCGAT
AAAACAGGCA AAGACTTAAG CTACTGCTGT GAGCCTAAGC TTGATGGACT CGCGGTGAGT
ATCGTCTATC GTGATGGCGT ATTTGAGCGA GCCGCTACCC GCGGCGATGG CCAAACTGGC
GAAGACATTA CTGAGAACGT TCGCACCATT AAATCGATCC CGTTAACACT ACGTGGTGAT
AACTTCCCGC CATTGGTTGA GGTGCGCGGT GAGGTGATTA TGCCTCATAA AGCATTCGAT
GCTCTCAACG AGCGCGCTCG AGTAAAAGGG GATAAGCTAT TTGTTAACCC TCGCAATGCT
GCCGCTGGTA GTTTACGCCA GCTCGATAGT AAGATCACCG CCAGTCGCGC CCTTGGTTTC
TATGCCTACG CCTTAGGTGT GGTAGAGCCT GAAACATGGG AGCTTGCTGA TAGTCATTAT
GGTCAACTTG AGCAGCTGCG ATCATGGGGC GTTCCTGTGA GCCAAGAGGT TAGGGGGTGT
GAGACCGTTG CCGAGGTGAT GGCTTATTAT TACGATATTC AACAGCGCCG TAGCAGCCTT
GAGTTTGAAA TCGATGGTGT GGTCGTAAAA GTCAATCAAA TAGCCCATCA GCTCAGCCTA
GGTTTCGTGG CCAAGGCGCC GCGCTGGGCG ACAGCGTTTA AATTTCCGGC CCAAGAAGAG
ATGACCCTAC TAGAAGGTGT CGATTTTCAA GTGGGGCGTA CAGGCGCCGT CACACCTGTG
GCTAGGCTGA AACCTGTGTT TGTCGGTGGC GTTACCGTAT CGAATGCAAC ACTCCATAAT
GCCGATGAAA TTGCACGACT CGGCGTTAAG GTCGGTGACA CCATCATCAT CCGCCGCGCC
GGTGACGTGA TCCCACAAAT TGTTGCCGTA GTGGCAGAAA AGCGTCCAGA TGATGCTAAA
GATATTGTTT TCCCTGCTCA TTGTCCTGTG TGCGACAGCG AAGTTGAGCG TGTAGAAGGC
GAAGCCGTGA CTCGTTGCAC GGGGGGATTA TTCTGTGAAG CCCAGCGTAA GGAAGCTATT
AAGCACTTTG CTTCACGTAA GGCGCTGGAT ATCGATGGTA TGGGCGATAA AGTTGTCGAG
CAACTTATCG ATAAAGAGTT AGTTGAGAGC CCTGCAGATC TTTTTAGACT CACTGCATCG
GCCATGACTA TGCTTGAGCG TATGGGAATG AAGTCGGCAA CTAAGTTAGT GGCCGCGATA
GAAGTGGCAA AACAGACGAC GTTTGCACGA TTCCTTTATG CATTGGGTAT TCGCGAAGTG
GGTGAGGCAA CCGCAGCTAA TCTTGCTGCC TACTTTAAGA CATTAGAAGC CCTTAAGGCG
GCCAGTGCAG AAGAGTTCAT CAAAGTCGAT GATGTTGGCA CTATTGTGGC GGCGCACCTA
GCGCACTTCT TAGCTCAGCC GCATAACCTT GAGGTTATCG ACAAGCTAGT TGAGGCCGGG
ATCCATTGGC CTGCTGTTGA AGAGGTTGCT GAAGAAGACC TCTCGCTTAA AGGGCAGACT
TGGGTATTAA CAGGCACCTT GACCCAGCTA AACCGTAATG ATGCTAAGGC TAAATTGCAG
GCATTAGGGG CAAAAGTGGC AGGGAGTGTG TCGAAAAATA CCGACTGTCT AGTCGCTGGC
GCTGCAGCGG GTTCTAAGTT GACTAAGGCA CAAGAGCTTG GCGTCAAGGT TATCGATGAA
GAAGCCTTGA TTGCAATTCT CTCATAA
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| Protein sequence | MPAIQNEIAQ LTAELNQHNY RYYVDDSPSI PDAEYDRLLN RLKALETEHP EFCRPDSPTQ
RVGGEALAKF EQIKHLKPML SLDNVFDEQE FTAFNQRIVD KTGKDLSYCC EPKLDGLAVS
IVYRDGVFER AATRGDGQTG EDITENVRTI KSIPLTLRGD NFPPLVEVRG EVIMPHKAFD
ALNERARVKG DKLFVNPRNA AAGSLRQLDS KITASRALGF YAYALGVVEP ETWELADSHY
GQLEQLRSWG VPVSQEVRGC ETVAEVMAYY YDIQQRRSSL EFEIDGVVVK VNQIAHQLSL
GFVAKAPRWA TAFKFPAQEE MTLLEGVDFQ VGRTGAVTPV ARLKPVFVGG VTVSNATLHN
ADEIARLGVK VGDTIIIRRA GDVIPQIVAV VAEKRPDDAK DIVFPAHCPV CDSEVERVEG
EAVTRCTGGL FCEAQRKEAI KHFASRKALD IDGMGDKVVE QLIDKELVES PADLFRLTAS
AMTMLERMGM KSATKLVAAI EVAKQTTFAR FLYALGIREV GEATAANLAA YFKTLEALKA
ASAEEFIKVD DVGTIVAAHL AHFLAQPHNL EVIDKLVEAG IHWPAVEEVA EEDLSLKGQT
WVLTGTLTQL NRNDAKAKLQ ALGAKVAGSV SKNTDCLVAG AAAGSKLTKA QELGVKVIDE
EALIAILS
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