Gene Spea_1681 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_1681 
Symbol 
ID5662077 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand+ 
Start bp2039629 
End bp2040306 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content43% 
IMG OID641236268 
ProductTetR family transcriptional regulator 
Protein accessionYP_001501540 
Protein GI157961506 
COG category[S] Function unknown 
COG ID[COG3226] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.296499 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTTGTAC CTCTGACCTA TGTCGGACAT CAGTCAAACC GTAGCGATGG CCAAGCACGC 
CGTATTGAAA TATTAGAAGC AACATTACGC TTAATCGTAA AAGAGGGGAT CCGCGGGGTT 
CGTCATCGCG CGGTCGCTAC CGAAGCTAAT GTGCCATTGT CGTCAACAAC TTACTACTTT 
AATGACATTA AAGATCTCAT CAGTGATTCG TTAACCTACT TTGCCGAAAA GACGCTGTGG 
ATGAATAAGG CGTTAGAACA TAAGAGTTAC GCCTTGGTTG AGAGTGTGAG GCTAGAACAA 
CAGACGGCGG ATGAGTCGCA GATGAAGGCG TTTATTATCG ACAATCTCAG TCAATTTATC 
TGTGAGCATA TTAAAGATCA GTTAGCTCAT CGAGACGACA GGATTTTGGA GGTCGCGTTT 
CATGAAGAGG CGTTACGTAA CCCGCAATTG GCAGCGGCAA TCACTGCATT AGATAAAACC 
TTTCTAGATA GTATTAAACA TTTTTTTGCT GATATGGGGT CAATTTCGGC TAATGCTGAC 
GCACATCAGG TGTTAGCTAT AATTAAACTG CTCGAGTACC AGTACCTTAT TCGAACAAAT 
ATCGATGATC ATGCTTTGCT AGAGATAGTC AGCTCAACGG TCTCGCATAT TGTGATGGCA 
ATAAAAAACC CAAGCTAA
 
Protein sequence
MFVPLTYVGH QSNRSDGQAR RIEILEATLR LIVKEGIRGV RHRAVATEAN VPLSSTTYYF 
NDIKDLISDS LTYFAEKTLW MNKALEHKSY ALVESVRLEQ QTADESQMKA FIIDNLSQFI 
CEHIKDQLAH RDDRILEVAF HEEALRNPQL AAAITALDKT FLDSIKHFFA DMGSISANAD 
AHQVLAIIKL LEYQYLIRTN IDDHALLEIV SSTVSHIVMA IKNPS