| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1677 |
|---|
| Symbol | panF |
|---|
| ID | 5662073 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 2033989 |
|---|
| End bp | 2035428 |
|---|
| Gene Length | 1440 bp |
|---|
| Protein Length | 479 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641236264 |
|---|
| Product | sodium/panthothenate symporter |
|---|
| Protein accession | YP_001501536 |
|---|
| Protein GI | 157961502 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4145] Na+/panthothenate symporter |
|---|
| TIGRFAM ID | [TIGR00813] transporter, SSS family
[TIGR02119] sodium/pantothenate symporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.874122 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGATGA CTAGTCTGTT GCCTGTGTTA ATTTATCTGG TTTTAAGCTT GGTTATCACT
CGAGTCTGGA GTGCGCGTCA ATCTCAGCAG CTCTGTGACG ATAAAGCTCA GCGCTTCTTC
ATTGGTGGTG CTTTTCTTAG CGGCCCATTA TTAGCATTAA CTCTGGTAGC AACCTATACC
AGTGCTGGTT CGTTTATTGG TGGTCCAGGA GCGGCTTATA AATTCGGTTT GGGGTGGGTT
TGGCTAGCCG TGATCCAGGT GCCAGTGGTT ATTCTTACCT TGGGTGTGTT AGGGCCTAAG
TTTCTCGCGC AAAAAAAACA ATACAGCACC ATTATTGAAT GGCTAGACCA CCGTTTTCAA
AACAACTGGT TAAGTGCTAT TGCCATGTTG AGCTTGGTCG TTGGTTTTGT GGCGATGATC
TCGGTGCAGT TTATTGGCGG CGCACGATTA CTCTCTGGCG TCACTGGGAT CAGCTATGAA
TTAGGTTTAG GGGTATTCGT GCTTACGGTC TTAGCCTATA CCTTAACCGG TGGTTTCAGG
GCGGTCGTAC TCACTGACGC TTTGCAAGGC ATGGTGATGC TATTGGGATT AATCATCCTA
TTGCTCGTCA TTCTTACTCA GCCCGACCTA AGCGCTCAAC TTGCTCAGCA GACCGCTAAA
ACGCCGCAGT TATTAAGCCC TCATGGTGTT GATGACTTTT TAGGCTGGCC TATGATGTTG
TCATTTTGGG TGTTAATTTG CTTCGGCACT ATGGGATTGC CGCATACGAT TGTTAGGCTG
CTGGCGGTTA AAGATCGCCA GTCATTAAAA AAAGGCATGC TTTGGGGCAC CATAATCTGC
TTTTTGATGA CACTGCTTCC GCATTTGTGT GGCTTCCTCG GTCGGGCGCT GTTTCCTGAC
TTAACGGTAC CCGATCAGAT AATGCCGACC CTAATCGCTC AGCTCATGAG CCCATTTTGG
GCGGGTATTT TACTCGCCGC ACCGATAGCC GCAGTTATGT CATCAGTTGA CTCTATGTTG
TTACAGTCGG CAGTGAGCAT TGTGCGTGAT GGCATGGTCA AAGCTAGACC ACAGATGGGG
GCAACTATAC AGGTGCGTTT GACCCAAGTG GTGATGCTGC TTATTACGGC ATTAGCCTGC
TTCTGGGCTG TAAAGCCTCC GGATATGATT GTATGGATTA ACCTAGCTGC CTTTGGTGCC
CTGCAAGCGG TATTTTTATG GCCTATCATA GCGGGATTAT TCTGGCCAAG TGTTAATGGG
CATACGGCTC TAGTTGCTAT GTGCAGCGGT ATGGTTAGCT ATTTAACTCT TCAGTTGCAG
ACACCACTGA TTTTCAACAT ACATCCGATT GTTCCCGCAT TGCTATTTTC GTTACTGATG
TTGGTTACTA GTCACTTAAT TAGCAAATCC TTTGTTAAGG GTTCTATTGA AACTCGTTAA
|
|---|
| Protein sequence | MTMTSLLPVL IYLVLSLVIT RVWSARQSQQ LCDDKAQRFF IGGAFLSGPL LALTLVATYT
SAGSFIGGPG AAYKFGLGWV WLAVIQVPVV ILTLGVLGPK FLAQKKQYST IIEWLDHRFQ
NNWLSAIAML SLVVGFVAMI SVQFIGGARL LSGVTGISYE LGLGVFVLTV LAYTLTGGFR
AVVLTDALQG MVMLLGLIIL LLVILTQPDL SAQLAQQTAK TPQLLSPHGV DDFLGWPMML
SFWVLICFGT MGLPHTIVRL LAVKDRQSLK KGMLWGTIIC FLMTLLPHLC GFLGRALFPD
LTVPDQIMPT LIAQLMSPFW AGILLAAPIA AVMSSVDSML LQSAVSIVRD GMVKARPQMG
ATIQVRLTQV VMLLITALAC FWAVKPPDMI VWINLAAFGA LQAVFLWPII AGLFWPSVNG
HTALVAMCSG MVSYLTLQLQ TPLIFNIHPI VPALLFSLLM LVTSHLISKS FVKGSIETR
|
|---|
| |