| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1648 |
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| Symbol | |
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| ID | 5662045 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 1991861 |
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| End bp | 1992733 |
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| Gene Length | 873 bp |
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| Protein Length | 290 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641236236 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001501508 |
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| Protein GI | 157961474 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.000180778 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGAAA AATTGCAGAA AGTCTTGGCC CGTGCAGGCC ATGGCTCCCG TCGTGAGATG
GAGGCATGGA TTGCTGCAGG TCGAGTTAGT GTTGACGGCG AAATTGCAAG CCTAGGTGAT
CGCGTTGAAT CTGACGCAAA GATCCGTATC GATGGCCGTA CAGTTTCAAT TCGTTCTGAA
GAAGATGTGG TTTGTCGTGT TATTGCATAC CACAAACCTG AAGGTGAAAT CTGTAGTCGT
AAAGACCCAG AAGGACGCCC AACGGTATTT GACCGTCTAC CAAAAACTCG CGATTCACGC
TGGGTTGCTG TAGGACGCTT GGATATCAAC ACATCAGGTT TATTGTTGTT TACCTCTGAT
GGTGAACTAG CAAACCGCCT AATGCACCCA TCAAATGAAG TGGAGCGTGA ATACGCTGTA
CGTACGTTTG GTGAAGTGAA TGACGCTTGT ATCCAACGTT TACGCATGGG CGTAACGTTA
GAAGATGGCC CAGCAAACTT TGACAAAGTT AAAGCTGCTG GTGGCGAAGG CATGAACAAG
TGGTGGCATG TCAGCTTAGC TGAAGGCCGT AACCGTGAAG TTCGTCGTCT ATGGGAATCT
CAAGAGGTTC AGGTAAGTCG TCTTATCCGT ATTCGTTACG GTATGATTGA ACTGCCTAAA
GCTCTGCCAC GTGGTGGTTG GATTGAGTTG CCAATTGAAG AAGTTAACTA CTTACGTAAA
ACAGCGGGTA TGGAAGAGGA AACTCGTACA TTGCTGGGCA CTGATAAACA CAGTGTTGCA
CGTAATAAAG TACGTAGCGC AAAAATCAAG CGCGCTGTAC ATAAGCATAA AGTTGCTACA
GGTAAGCCAA AGCCAACGCG TCAGCGTAGC TAA
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| Protein sequence | MSEKLQKVLA RAGHGSRREM EAWIAAGRVS VDGEIASLGD RVESDAKIRI DGRTVSIRSE
EDVVCRVIAY HKPEGEICSR KDPEGRPTVF DRLPKTRDSR WVAVGRLDIN TSGLLLFTSD
GELANRLMHP SNEVEREYAV RTFGEVNDAC IQRLRMGVTL EDGPANFDKV KAAGGEGMNK
WWHVSLAEGR NREVRRLWES QEVQVSRLIR IRYGMIELPK ALPRGGWIEL PIEEVNYLRK
TAGMEEETRT LLGTDKHSVA RNKVRSAKIK RAVHKHKVAT GKPKPTRQRS
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