| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1616 |
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| Symbol | |
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| ID | 5662013 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 1955564 |
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| End bp | 1958437 |
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| Gene Length | 2874 bp |
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| Protein Length | 957 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641236204 |
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| Product | hypothetical protein |
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| Protein accession | YP_001501476 |
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| Protein GI | 157961442 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3170] Tfp pilus assembly protein FimV |
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| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0172271 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACTTTC GCACATCGCA TCTTGTCGGC TTAATAGCCA CGGGGTTAGT GGCTATTGCT
GCCCCTTCGA TTAACCCGGT TGCTGCTGAG CCATTAAAAA TTACAGGGCC AGATGGCCAA
GTAAGACTCA ATGAGCAGAA TAGTCAAAGC ATTCGTCAAT ACGGTCCGAC AACCTCGGCA
GATACTTTCT GGAGTATTGC GCAGGCCGTA AAGCCTGATA ATAGTGTCAC CGTTTACCAA
GTGATGACGG CACTATATGA CGCCAATCCC CACGCATTTT CAAGTAAAAA CTATAACAGC
CTAGAACGCG GCATGATTTT GTTGGTGCCG ACTAAAGCTG TAATGCAGCA GACCTCTCAA
ATTGACGCCA AAGCACGCGC CGAGCGTAAC GATCGTAACT GGTCAACAGC TGTCGCTAAA
TCGAGTGTGG CTCCTAAAAC CGTCGTTCAA AAAACTGTGC CTCCAGAGGC TGTTGCTGCA
AAGATTGAAG CGCAAAAAGT GACAGTTGCT AAACCCTCCG TTGGCGTAAA GTCAAATCCA
GTGATTGCAG AGTTATCGGC AGAAGTTGAT GCCCTAACTA AACAGATGGA AGAGATCCAA
GCACTAAACC TCGAGCTAAC TGATGAGCTT GCAAGGGCAA GCGATGAAAT AGTGGTTGGC
TCAACGGATA CCGAGGCGTT TCAGCAACAA ATCACCCAGC TTAAAGAAGA AAATGCGCTG
CTAAAGCAGG CACTACAAGA TACTAAATCT GAGAATGAAG CTTTAAATCA ACAATTACAG
CTTAAGCAGC AACAGCTTGC CGCATCAAGT GCACCTGAGC AGGAGCCAAC GTCGGATCTT
TGGCGAACCT TAATGGATAA CCCATTGCTA TTGATGCTTG GTGCGGCATT ACCCGCTTTA
ATCGTAGTGG CGCTGTTTTG GTTGTTTATT CGCCGCAGAA GTGATGCGAA TTCTGAGCAG
CAGGAGAGTG GAGGCGCTGC TGAGAACGAA CTAAGTGGCA TGAAAGATGA CACTGCCATC
GAAGATAAGT CTGACGATGC CGACGGATTA GCGGTTCATT TAGATACTGA CGACGCTGCA
GTGCAGGCTC CATTGCAGGA GCTTGCGGTC GTAGGTGCTG TAACTCAGGC AGAGCAAGAA
GAGCAAGATA TTGTTGTTGA AGACTCTCAT GATGAAGGCC AGTCATTAGA CGATCTGTGG
GCCGAGGCGA TGGGTGAGCA AGAGCAAGAT GGAGCCAATG ATTTTGATGC GTTTCAAAAG
CAATCTAAGT CGCCAGAAGA AGAGGACTTG GACTCATTGC TTGCAGGTTT CGATGAACCT
GCAGAGCAAG CTGACGAAGA CCTATCTCTG AATGAGAAGC CTTTTGTTGC TGAAGACGAT
GATTTAGATG CACTGTTAGC AGGGTTCGAT GAACCGGCAG AGCAAGCTGA CGATAATGAG
CAGTCTTTTG TTGCTCAAGG TGTTGCTCAG GGCAGTAGTC AAGAAAGCGC TCAAGACGAT
ACTCAAAATG ACGATTTAGA TGCGTTGCTA GCAAGCTTCG ATGAACCTGC AGAGCAGGCT
GTTGGCACTC AAGAAGATGA TATCGATGCT TTGCTTGCCG ATTTTGATTC TGAAAATCAG
CAGCTAGAGG AGGCTCATGA GCCAGAAGTT AAGGTCGCCG AGGATGACTT AGATGCGTTG
TTAGCAGAGC TTGATGATAA ACCTCATGAC GAATACAACG CCGACGCGCT TTCAGATGAG
ATGGCCGCCG AACTCGAGCT TGGTTTCGAG ATAGCTGCAG AGCTTGATTT ATCAGAGGAT
GACGCACAGC AAGCTAAGCC TGATAGTGAG CTAGACAGTG AACTTGATGC GCTGCTTGCA
GAGTTTGACT CTCCGGCAGA TGTTAGTGAT ATCGAGCAGG AACAAGAGCT ACAACAGGCT
AGTGAAACTG AGCTTGCTAT AACTGAGCCT GCAATTGATG AGACGCCAGT TGAGATAAAA
GAGGCGTCAG CGGCAATCAC TAAGGATTCA AGTAGCTTAG ATTTCGACTT GAGTGATTTT
GAGCCAAGTA GCCTGACAGC AAATACTGAT AGCCGTGATG CTGAGCCTAG CAATAATCAC
GATGAGGAGT TGCTAGAGTT TACTCTGCCA GAACCAGAAC CAGAACCAGA ACCAGAACCA
GAACCAGAAC TATCTTCGGA GTTAGATCCT CAAGTAATCG AAAAGACCGA TAAAGAGAGT
GGTTTCTTCG ATGATCTTAA AGGCAATAAG AAAACTGAGG AAAACAGTTT AGATTGGGAA
AGTATTGCCG CTCAGAGTGG TAATGATGAT CCAGCTGAAC TTGGCGCAGA ATTAGCTTTT
GCAGCAACTG AAAAAGTTGA AGTGTCTGAT GATGAGCTGT TAAGCGGGTT AGTCTCGAAA
GGTGCAGCGC AAGATACAGC GCTTGAGCTT GACGCCGATG AGACATTCTC ACTCGACGAT
GATAGTAAGA TGACCGTTGA CGAGGCGCTA GCCGCTCTGG ATGCTGAAGA ATTAGGTGCC
AAAGAACTGA GCAAGAGCGC GGTTGCTATG CACGACTTAA CTAGCTTCCA GAAAGATAAT
GGCTTTATTG ATATCGATAG ATTGTTGAGC GAAGCCGATG AAGATAGCGG CGAAATCGAT
CTTTATAAGG AACTTGATGT CGACATGGGC GAGTTAGATT CGCTAAAGGG CAGTACTCCT
ATGGTCGATG TCGATGATGA AGAAAACTCG GTTAACGCTA AGTTGGATTT AGCCCGCGCC
TATATTGAGA TCGATGACAG TGACAGTGCG CGAGCACTAC TAAAAGAGGT CGAACTCGAT
GGTAATGATC GCCAACAGGC CGAAGCCTTA GGTTTACTCA AAGAGTTAGT GTAA
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| Protein sequence | MNFRTSHLVG LIATGLVAIA APSINPVAAE PLKITGPDGQ VRLNEQNSQS IRQYGPTTSA
DTFWSIAQAV KPDNSVTVYQ VMTALYDANP HAFSSKNYNS LERGMILLVP TKAVMQQTSQ
IDAKARAERN DRNWSTAVAK SSVAPKTVVQ KTVPPEAVAA KIEAQKVTVA KPSVGVKSNP
VIAELSAEVD ALTKQMEEIQ ALNLELTDEL ARASDEIVVG STDTEAFQQQ ITQLKEENAL
LKQALQDTKS ENEALNQQLQ LKQQQLAASS APEQEPTSDL WRTLMDNPLL LMLGAALPAL
IVVALFWLFI RRRSDANSEQ QESGGAAENE LSGMKDDTAI EDKSDDADGL AVHLDTDDAA
VQAPLQELAV VGAVTQAEQE EQDIVVEDSH DEGQSLDDLW AEAMGEQEQD GANDFDAFQK
QSKSPEEEDL DSLLAGFDEP AEQADEDLSL NEKPFVAEDD DLDALLAGFD EPAEQADDNE
QSFVAQGVAQ GSSQESAQDD TQNDDLDALL ASFDEPAEQA VGTQEDDIDA LLADFDSENQ
QLEEAHEPEV KVAEDDLDAL LAELDDKPHD EYNADALSDE MAAELELGFE IAAELDLSED
DAQQAKPDSE LDSELDALLA EFDSPADVSD IEQEQELQQA SETELAITEP AIDETPVEIK
EASAAITKDS SSLDFDLSDF EPSSLTANTD SRDAEPSNNH DEELLEFTLP EPEPEPEPEP
EPELSSELDP QVIEKTDKES GFFDDLKGNK KTEENSLDWE SIAAQSGNDD PAELGAELAF
AATEKVEVSD DELLSGLVSK GAAQDTALEL DADETFSLDD DSKMTVDEAL AALDAEELGA
KELSKSAVAM HDLTSFQKDN GFIDIDRLLS EADEDSGEID LYKELDVDMG ELDSLKGSTP
MVDVDDEENS VNAKLDLARA YIEIDDSDSA RALLKEVELD GNDRQQAEAL GLLKELV
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