| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1609 |
|---|
| Symbol | |
|---|
| ID | 5662006 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 1948811 |
|---|
| End bp | 1949977 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641236197 |
|---|
| Product | alanine racemase domain-containing protein |
|---|
| Protein accession | YP_001501469 |
|---|
| Protein GI | 157961435 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3616] Predicted amino acid aldolase or racemase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00354322 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGCTA ATGAAAGCCA AAACCCAGAA TTATTGAGAA AGTACCAGAG TCTTGATACG
CCTTTCTTGT CGGTTGATAA ACAAATCGTG CTAAAAAACT TAGCTAGATT GCGTAATAAG
ATAGATGGGT TAGGAGCTGA ATTAAGACCT CATTTTAAAA CGGTAAGAGC AATTGAAGCT
GTTGAGCATT TATTACCGCA AAAAATATCC CCAATTACGG TGTCGACGGT AAAAGAAGCC
GAGGCGCTGG TAGAAGAGGG CTATAGCAAT ATCGTTTATG CGGTGGGTAT TTCAGAGGGG
AAATTACCTA GAATTTCTCA GCTTATTGCG AAAGGTGCAA AAGTACGAGT ATTGCTAGAC
ACCCTAGAGC AAGCTCAGTT TGTGAGCCAA TATAGTGAAC AGCACTGCTG CGTTATTCCA
GCAATGATTG AAGTTGATTG TGACGGACAC CGAGGCGGCA TTCATCCTGA TGACCCTCTG
CTAATCGAAA TCGCCAATAT ATTGCATCAA GGCGTAGCGA GCTTTCATGG CGTACTTGCT
CATGCCGGTG AGTCATATCT TTGTTTCGAT CCAAAGTCAT TAGCAGAAGC TGCCAATAAT
GAAGTTAACA TGACGCTAAA AGCGGCTAAT AACCTTCGCG CGGCAGGGAT CCCTTGTGAC
ATAGTGAGTA TAGGATCAAC GCCTACCGCT CATAGTTATC AAGACTTAAA TGGCATCACC
GAAGTGAGGG CCGGGGTGTA TGGTTTCTTC GACTTAGTCA TGGCCGGAAT AGGCGTCTGT
CAGCTAAAGG ATATCGCTGC TAGCGTAGTG ACCACCGTCA TCGGCCATAA CAGAGAAAAG
GGCTGGATAT TTATCGATGC AGGCTGGATG GCACTGTCTT TAGATCGCGG CACAGCGGGT
CAACCCAAAG ATTGCGGTTA TGGTTTGGTT ACCGACTGCA ATGGAGCAGT GCTTGATGGA
CTACAGGTTA TTTCTGTTAA TCAGGAGCAC GGCATTATAG GTGCGGTTGA TAATAGTGAC
TTGAGCCTAG ATAACTTCCC TGTAGGTAGT CGATTACATA TTTTACCTAA TCATGGCTGC
GCCACAGCCT CCATGCATCA GCACTACCAT GTGTTTGATA CAGCGAATGA AACCTATGAG
ATCTGGAATC GAATTCAAGG CTGGTAA
|
|---|
| Protein sequence | MLANESQNPE LLRKYQSLDT PFLSVDKQIV LKNLARLRNK IDGLGAELRP HFKTVRAIEA
VEHLLPQKIS PITVSTVKEA EALVEEGYSN IVYAVGISEG KLPRISQLIA KGAKVRVLLD
TLEQAQFVSQ YSEQHCCVIP AMIEVDCDGH RGGIHPDDPL LIEIANILHQ GVASFHGVLA
HAGESYLCFD PKSLAEAANN EVNMTLKAAN NLRAAGIPCD IVSIGSTPTA HSYQDLNGIT
EVRAGVYGFF DLVMAGIGVC QLKDIAASVV TTVIGHNREK GWIFIDAGWM ALSLDRGTAG
QPKDCGYGLV TDCNGAVLDG LQVISVNQEH GIIGAVDNSD LSLDNFPVGS RLHILPNHGC
ATASMHQHYH VFDTANETYE IWNRIQGW
|
|---|
| |