| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1552 |
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| Symbol | |
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| ID | 5661949 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 1887593 |
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| End bp | 1888642 |
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| Gene Length | 1050 bp |
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| Protein Length | 349 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641236140 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001501412 |
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| Protein GI | 157961378 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGATA AAATATACCA ATATATTAGC TATGCAGTAC TGGGTTTAGC CGTACTGTTT
TCGCTGTTTT TGGTCACAAC AGACAATATC GCTCCCTTCA CGACACAGGC TGCTGTGCAA
AAGAACGTGG CGACAATTGC CGCCGAAGTT GAGGGCGTTG TGACTCAGGT TTATGTCAAA
AATGGCCAGC AAGTGAGTAA AGGGCAAGCA TTATTTTCAA TCGATCAAAG CCGATACCTT
ATTGCGGTAA AACAAGCACA GGCTGAGCTT GACCAAGCAC TGGAGTCCAA TTCTGCAAAA
GGACAAGAGC TGGTCTCGGC TGAGCAGCTT ACCTCCCAAC GAGCCTTAGA GAAATTGAAT
GCCAGCCGTA AGATGAAGCG ATATGAGTCA TTATTGAAGC AGGGTACGGT TACTCAGCAA
GAGTTAGAAG ATACACAGCT GGCTTATAAA GTATCTGTCA GCACTGAGTC AGCGGCCAAA
GCCGAAGTGA AGCGTATTCA GGTTGAGCTG GCAACAGAGC AAGATAATGC AGCGATTGAA
CTCGCTAAGG CTAAGCTGGC TCAGGCTCAA CTCGATCTTG AACATACCGT CATTAAAGCC
AAGCTTGCGG GTTCAGTGAG CAATTTGCAG CTGCAAACGG GAAGCTACTT AGCTGCAGGG
GCCAGTGCAA TGTTTGTAGT CAGTGATCAA GACACTTGGC TCAGTGCGGA CTTCAATGAA
AAAGGCATTG CTCACCTTAA AGCTGGCGCC CGAGTAGCTG TGGTTTTCGA TGCACTGCCG
GGCAAAGTGT TTCAGGGAAA AATACTTAAT CAAGACAGTG CAATTTATGA TGCATCGAGT
CAGCTCGGTC AGCTAGCCGA TGTGACTAAC AGTGATCGCT GGATCAGAGA ACAGCAGAAA
ATTCGCACTC GCATCAGCGT CAATGAGCAA AACCCGCAAC TGATTTCGGG TTCTAGAGCC
AGTGTGATGG TAGAAAATGG TAATTGGCTG GTGGATACTT GCGCCAAGCT CTGGATGCAC
TTAGTGAGCT ATTTTCACTA TATATATTGA
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| Protein sequence | MKDKIYQYIS YAVLGLAVLF SLFLVTTDNI APFTTQAAVQ KNVATIAAEV EGVVTQVYVK
NGQQVSKGQA LFSIDQSRYL IAVKQAQAEL DQALESNSAK GQELVSAEQL TSQRALEKLN
ASRKMKRYES LLKQGTVTQQ ELEDTQLAYK VSVSTESAAK AEVKRIQVEL ATEQDNAAIE
LAKAKLAQAQ LDLEHTVIKA KLAGSVSNLQ LQTGSYLAAG ASAMFVVSDQ DTWLSADFNE
KGIAHLKAGA RVAVVFDALP GKVFQGKILN QDSAIYDASS QLGQLADVTN SDRWIREQQK
IRTRISVNEQ NPQLISGSRA SVMVENGNWL VDTCAKLWMH LVSYFHYIY
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