| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1547 |
|---|
| Symbol | |
|---|
| ID | 5661944 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 1883426 |
|---|
| End bp | 1884679 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641236135 |
|---|
| Product | LolC/E family lipoprotein releasing system, transmembrane protein |
|---|
| Protein accession | YP_001501407 |
|---|
| Protein GI | 157961373 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.124688 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCCT TGTTAGCGAT GTGGGTGGGC TGGCGTTTTT ACTTTGCCCG CCAATCGAAT
CGATTTATTA GCTTTATCTC TTTCGCCTCA ACGGCAGGCA TTGCTCTTGG AGTTGCTGTG
CTGATTGTGG TGCTCTCGGC TATGAACGGC TTTGAAAAAG AGTTAGAGCA GCGTCTATTA
GGCGTGGTGT CCCATGGTGA GCTAATTGGC GTTAACGAAC CTATTCATCA ATGGCAATCG
ATAGTCGAAG ATGCTAACAA GATCCCCGGT ATTGCCGCCG CAGCGCCGTT TGTGCGTATG
CAGGGGCTCG TGCAGAAGGT TGGCGGCTTT CAAGGCCTGA CCGTGCTAGG GGTCGATGTC
GACACAGAGG CGAACGTTTC CAATATTAAG CAATTTATGT CACCTGAAAG CTGGCAGAGT
CTTGCTCAGC AGGGCAGCAA TAATATCGTC TTAGGTAAAG GCTTGGCTAA GAGTCTCGAT
TTAAAAGTTG GTCAGTCCCT TAGCTTGTAT ATGCCCAATA TTAATAACCA GTCACAAAAT
AGGATCGGCG CGGCAAAGAG TCACCGTTTT GTGGTCTCGG GGATTTTTGA ACTCGGTGGT
GAGCTGGATA TGACCACGGC TTATATTCCG ATGCAGTATG CAGCTAAGAC CTTAAAGCTT
GGCGACAGTG TTTCTGGCGT GCGCATTAAA GTGGACGATG TGTTTGCCGC ACCAAGGCTC
ATTCGCGATT TAGGTTATAG CCAACAGCAG TATGTGTATA TTTCAGACTG GACTCGCACT
CAAGGCCACC TGTATCAAGA TATTCAGTTG GTGCGCATGG TGATGTACTT AGTGTTGGCG
CTAGTGATAG CGGTGGCTTG TTTTAATATC GTGTCGACTT TAGTGATGGC GGTGCGTGAC
AAGCAGTCTG AAATTGCGAT TTTACTTACC ATGGGCATGA AGAAAGCCTC AATCATGCTG
ATTTTTATCG TTCAAGGGGC GTTTAATGGC ATTTTAGGTT GCGCAATCGG CGGCGTGTTA
GGGACGTTAA TCGCGCTAAA CTTAAGTGCA ATAGCCCGTG GCATAGAGTC GTTATTCGGG
ATCCAACTGT TATCTGCCGA TGTCTATTTT ATTGACTTTT TACCCTCGCA GCTTAAAGGC
GGCGATGTGG TGACGGTTAT CGCACTAGCC TTTGTGATGA GCGTTATTGC GACTCTATAT
CCCGCATGGA AAGCCAGCCA GACCCCGCCA GCAAGAGCAT TAGCGGGCCG TTAG
|
|---|
| Protein sequence | MKALLAMWVG WRFYFARQSN RFISFISFAS TAGIALGVAV LIVVLSAMNG FEKELEQRLL
GVVSHGELIG VNEPIHQWQS IVEDANKIPG IAAAAPFVRM QGLVQKVGGF QGLTVLGVDV
DTEANVSNIK QFMSPESWQS LAQQGSNNIV LGKGLAKSLD LKVGQSLSLY MPNINNQSQN
RIGAAKSHRF VVSGIFELGG ELDMTTAYIP MQYAAKTLKL GDSVSGVRIK VDDVFAAPRL
IRDLGYSQQQ YVYISDWTRT QGHLYQDIQL VRMVMYLVLA LVIAVACFNI VSTLVMAVRD
KQSEIAILLT MGMKKASIML IFIVQGAFNG ILGCAIGGVL GTLIALNLSA IARGIESLFG
IQLLSADVYF IDFLPSQLKG GDVVTVIALA FVMSVIATLY PAWKASQTPP ARALAGR
|
|---|
| |