| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1535 |
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| Symbol | |
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| ID | 5661932 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 1867129 |
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| End bp | 1869819 |
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| Gene Length | 2691 bp |
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| Protein Length | 896 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641236123 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_001501395 |
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| Protein GI | 157961361 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.351865 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTAAAT CGCTAGTAAT CGTCGAATCA CCGGCCAAAG CCAAGACTAT TAATAAATAT
CTAGGCAAAG ATTTCATCGT TAAGTCGAGT GTAGGTCACA TCCGTGATCT GCCAACATCA
TCGAGTTCAG ACGCTAAAGT TGTCAGTAAG ACAGCTGCTG AAGTCAAAAA GATGTCTCCA
GAGGAGAAGG CTGAGTATAA GAGTTTAAAA GCGAAGCAAG CTTTAGTTGC GCGCATGGGG
GTCGATCCAG AAAAAGGCTG GAAAGCAAAC TATCAAACCT TACCAGGCAA AGAAAAAGTC
GTTAAGGAAC TCCAAACTCT GGCAGCGTCT GCTGACCATA TCTATCTCGC AACCGATTTG
GATAGAGAGG GAGAGGCGAT AGCTTGGCAT CTACAGCAAG TGATTGGTGG AGATGAGTCA
CGTTATCAGC GAGTAGTTTT TAACGAAATT ACCAAGACAG CGATTCAAGA TGCATTTAGC
CAGCCATCGG TGCTAGACAC CAATATGGTT AATGCACAAC AGGCGCGTCG CTTCTTAGAC
CGTGTTGTTG GCTTTATGGC TTCTCCACTA TTATGGAAGA AGGTCGCCCG CGGTCTGTCT
GCTGGGCGTG TACAGTCTGT TGCCGTCCGC CTTGTGGTTG AACGCGAAAG TGAGATTAAA
GCCTTTGTGC CAGAAGAGTT CTGGGATGTT CATGCTGAAC TCAATACCTT AACCGACGAC
CTGCTAAAAA TGCAGGTGGT TAAATTCCAA GGTAAAGCAT TCAGCCCTGT CAACGAAGTC
GAAGCGCAAA CTGCAGTTAG TCAGTTATCT CAGTCCAGCT TTGTGGTTGC CGCTCGTGAA
GACAGAGCGA CATCGAGCAA ACCATCGGCA CCTTATATTA CATCGACGTT ACAGCAAGCT
GCGAGTACGC GCTTAGGCTT TGGTGTGAAG AAGACTATGA TGATGGCACA ACGCTTGTAT
GAAGCGGGCC ACATCACTTA TATGCGTACC GACTCGACTA ACTTAAGCCA AGAAGCGCTC
GATAACGTGC GTGACATGAT TGGTAAAGAG TATGGCGACA ACTACCTGCC TGAATCACCT
ATTCGTTATG GCAGCAAAGA AGGCGCACAA GAAGCCCACG AAGCGATTCG TCCTTCAAAT
GTAAAAGTGA GTGCAGCGTC GCTATCAGAC ATGGAGCGGG ACGCACAGCG CCTATACGAG
CTTATTTGGC GTCAGTTTGT GTCTTGTCAG ATGACACCTG CAAAATATGA TGCGACTCGC
CTGACTGTAA AGGCAGGTGA TTATGAGCTT AAAGCAACGG GTCGTACGCT TCGTTTCGAT
GGTTGGACGC GCGTTCAAAC TGCCATTAAG AAGAAAAATG AAGAAGACAA CACTTTGCCA
TACGTGGCAC AAGGTGATGC CGTCACGCTA AAAGAGCTAC TACCTAAGCA GCACTTTACT
AAACCTGCAC CACGTTACAG TGAAGCGTCT TTGGTTAAAG AGTTAGAAAA GCGTGGTATT
GGTCGTCCAT CTACTTACGC TACGATCATT TCAACTATCC AAGACCGTGG TTATGTGAAA
GTTGATAACC GTCGCTTCTT TGCAGAAAAG ATGGGTGAAA TCGTTAGTGA TAGCTTAGTG
GGTAGCTTTG AAGATCTAAT GAGCTACGAC TTCACTGCTA GCATGGAGCA AACATTAGAT
GATGTTGCTC AAGGTAAGCT TGAGTGGAAA AAAGTACTCG ATGGTTTCTA TAAAGACTTC
ACTAAACAAT TAGAAGTCGC TGAATTACCA CCGGAAGAGG GCGGAATGCG CCCGAACGAA
ATGGTGATTA CCGATAACAT CAAGTGTCCA ACCTGTGGCC GCCCTATGGG CATTCGTACC
GGTACGACTG GTGTATTCCT AGGTTGCTCT GGTTATGCAT TACCACCAAA AGAGCGCTGT
AAAACAACGT TGAACTTAAC GCCTGGTGAA GAGGCTGTGA GTAGCGGTGA AGACGCTGAA
ACTGAAGCTC TACGTGCTAA GCATCGCTGT GGGATCTGTG GCACAGCCAT GGATAGTTAC
TTAATCGATG AAGCTCGTAA ATTACACGTA TGTGGTAACA ACCCAACATG TAATGGTTAT
GAGGTAGAAG CGGGTCAGTT TAAGATTAAA GGTTACGAAG GGCCTATTAT TGAGTGCGAT
CGTTGTGGCA ACGATATGGA GCTTAAAAAC GGTCGTTTCG GTAAGTATTT TGGTTGTACA
AACACTGAGT GTAAGAACAC GCGTAAGCTG CTTAGGAGCG GTGAGGCTGC GCCACCAAAA
GAAGACCCTA TTCACTTACC TGAACTTAAG TGTACTAAGT CTGATGCATA TTTCGTGTTA
AGAGATGGTG CGGCGGGGAT CTTCCTTGCG GCGAGCACAT TCCCTAAATC ACGAGAGACT
CGTGGCCCGT TAGTCGAAGA GCTAGTGAAG TACCGTGAGC TGTTATGGCC TAAGTACCAG
TATCTTGCCG ATGCGCCAGT GGCTGACGAT GACGGTAATC TTGCATCTGT ACGCTTTAGC
CGTAAGACTA AAGAGCAGTA CGTTGCAACA GATGTTGATG GTAAGGCGAC TGGCTGGACA
TCAAAGTTTG TTGATGGCAA GTGGGTGACA GAGGCAAAAG CCAAGCCTAA GCCTAAGGCC
AAAGCAAAAC CTAAAGCCAA GCCAAAAGCT AAGGCGACCA AAGCCGAGTA A
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| Protein sequence | MGKSLVIVES PAKAKTINKY LGKDFIVKSS VGHIRDLPTS SSSDAKVVSK TAAEVKKMSP
EEKAEYKSLK AKQALVARMG VDPEKGWKAN YQTLPGKEKV VKELQTLAAS ADHIYLATDL
DREGEAIAWH LQQVIGGDES RYQRVVFNEI TKTAIQDAFS QPSVLDTNMV NAQQARRFLD
RVVGFMASPL LWKKVARGLS AGRVQSVAVR LVVERESEIK AFVPEEFWDV HAELNTLTDD
LLKMQVVKFQ GKAFSPVNEV EAQTAVSQLS QSSFVVAARE DRATSSKPSA PYITSTLQQA
ASTRLGFGVK KTMMMAQRLY EAGHITYMRT DSTNLSQEAL DNVRDMIGKE YGDNYLPESP
IRYGSKEGAQ EAHEAIRPSN VKVSAASLSD MERDAQRLYE LIWRQFVSCQ MTPAKYDATR
LTVKAGDYEL KATGRTLRFD GWTRVQTAIK KKNEEDNTLP YVAQGDAVTL KELLPKQHFT
KPAPRYSEAS LVKELEKRGI GRPSTYATII STIQDRGYVK VDNRRFFAEK MGEIVSDSLV
GSFEDLMSYD FTASMEQTLD DVAQGKLEWK KVLDGFYKDF TKQLEVAELP PEEGGMRPNE
MVITDNIKCP TCGRPMGIRT GTTGVFLGCS GYALPPKERC KTTLNLTPGE EAVSSGEDAE
TEALRAKHRC GICGTAMDSY LIDEARKLHV CGNNPTCNGY EVEAGQFKIK GYEGPIIECD
RCGNDMELKN GRFGKYFGCT NTECKNTRKL LRSGEAAPPK EDPIHLPELK CTKSDAYFVL
RDGAAGIFLA ASTFPKSRET RGPLVEELVK YRELLWPKYQ YLADAPVADD DGNLASVRFS
RKTKEQYVAT DVDGKATGWT SKFVDGKWVT EAKAKPKPKA KAKPKAKPKA KATKAE
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