Gene Spea_1472 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_1472 
SymbolsecD 
ID5661869 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand
Start bp1794684 
End bp1796516 
Gene Length1833 bp 
Protein Length610 aa 
Translation table11 
GC content46% 
IMG OID641236060 
Productpreprotein translocase subunit SecD 
Protein accessionYP_001501332 
Protein GI157961298 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.119469 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTGGAAAA ACCTAATGGT GATAATCATT ATCTCCATAG GTGCATTCTA TGCGATACCA 
AACCTTTTCG GTGAAGACCA CGCAGTTCAA GTGGTAGCCA CACGAGGAGC AGAGGTCTCA
GCGTCGACAA TGTCGACAGT AAATGAAGTA TTAAAGAGCA AAGGAATCGC TGTTAAGCGT
TCTGAGCTTG AAAATGGTCA GTTGTTAGTA CGTGTAAATA ATGGTGAAGA GCAATTACTT
GCTAAAGAAG CGATTAGCGA TGCGTTAGGC GACAAGTACA CCGTAGCACT AAACTTAGCT
CCAGCGACTC CAGAGTGGCT TGAGGCCATG GGCGGTTCGC CGATGAAACT AGGTTTGGAC
TTACGTGGTG GTGTTCACTT CTTAATGGAA GTGGATATGG GCGAAGCGAT TCGTAAGATG
ACCGAAGCCA AGGTTGCAGA CTTCAGAACT GATTTACGAG CTGAGAAAAT TCGCTACGCG
GGTATTCGTA ATGGCGCCAA AGGCATCGAG ATTAAGTTTC GCGATGCCGA GACTTTAACG
AAAGCTGAAA ACTTTCTTAA GTCTCGCAGC AATGACATGG TCTTCCAAGA CAAGACTGTT
GGCGATGACT ATGTCCTTGT TGCTAATCCA AGTGAAGCTT ATTTAAAGCA GATTAAAGAG
GAAGCACTAC AGCAAAACAT CACTACACTA CGTAACCGTG TAAACGAGCT AGGTGTGGCT
GAACCTGTTG TGCAACGTCA AGGTGCTGAA CGTATTATCG TTGAGCTACC AGGTGTTCAA
GATACTGCTC GCGCGAAAGA AATTTTGAGT GCGACAGCAT CGATTGAATT CCATATGGTT
GACGAGAAAG CCGATGTTCA AGCTGCAATG AGTGGCCGTG TGCCTGCGGG GTCTGAGCTT
TATCAGCGCC GTACCGGTGG TCCAGTTGTC TTGAAAAAAG CGGTTATGTT GACCGGTGAT
CATATTCAAG GTGCGCAGCC TAGCTTTGAC GAATATAGCC GTCCGCAAGT CGCAATTAAC
CTTGATGCGA AAGGTGGTTC AATTTTCTCT AACGTGACTA AAGACAACAT CGGTAAGCCG
ATGGCAACGC TATTTATCGA GTATAAAGAT ACCGGTGAAA AGAATGCTGA CGGTAGCGTT
AAGATGAAGA AGATTGAGGA AGTGATTTCG GTTGCTACCA TTCAAGCGCG TCTTGGTCGT
AACTTTGTTA TCACAGGTCT TGAGCATGCT GAAGCACAGA ACCTAGCGTT ATTGCTACGT
GCTGGTGCGC TAATTGCTCC TGTTTATATC GTTGAAGAAC GTACCATTGG TCCAAGCCTT
GGTAAGGAAA ACATCGACAA CGGTATGCAA GCCATGATCT GGGGTATGGC TGTTGTACTT
ATCTTCATGT TGGTTTATTA CCGTGGCTTT GGTCTTATTG CTAACTTAGC GCTAACCGCT
AACTTAGTGA TGGTTGTGGG CGTAATGTCT ATGATCCCTG GCGCAGTATT AACCCTACCT
GGTATTGCTG GTATGGTGTT AACTGTAGGT ATGGCGGTTG ATGGTAACGT ACTGATTTAC
GAGCGTATTC GTGAAGAACT TCGTAACGGT CGTAGCGTAC AGCAAGCGAT TCATGAAGGA
TACGGTAACG CATTCTCAAC TATCGCCGAT GCGAACATCA CTACCTTTAT GACGGCGCTT
ATCTTATTTG CCGTAGGTAC GGGAGCTGTG AAAGGCTTCG CGGTGACCTT AATGATCGGT
ATCGCCACTT CTATGTTTAC TTGTATCGTA GGTACACGCT CAATCGTGAA TGCGATATGG
GGTGGTAAAC GCGTGAAGAA ACTGTCTATT TAA
 
Protein sequence
MWKNLMVIII ISIGAFYAIP NLFGEDHAVQ VVATRGAEVS ASTMSTVNEV LKSKGIAVKR 
SELENGQLLV RVNNGEEQLL AKEAISDALG DKYTVALNLA PATPEWLEAM GGSPMKLGLD
LRGGVHFLME VDMGEAIRKM TEAKVADFRT DLRAEKIRYA GIRNGAKGIE IKFRDAETLT
KAENFLKSRS NDMVFQDKTV GDDYVLVANP SEAYLKQIKE EALQQNITTL RNRVNELGVA
EPVVQRQGAE RIIVELPGVQ DTARAKEILS ATASIEFHMV DEKADVQAAM SGRVPAGSEL
YQRRTGGPVV LKKAVMLTGD HIQGAQPSFD EYSRPQVAIN LDAKGGSIFS NVTKDNIGKP
MATLFIEYKD TGEKNADGSV KMKKIEEVIS VATIQARLGR NFVITGLEHA EAQNLALLLR
AGALIAPVYI VEERTIGPSL GKENIDNGMQ AMIWGMAVVL IFMLVYYRGF GLIANLALTA
NLVMVVGVMS MIPGAVLTLP GIAGMVLTVG MAVDGNVLIY ERIREELRNG RSVQQAIHEG
YGNAFSTIAD ANITTFMTAL ILFAVGTGAV KGFAVTLMIG IATSMFTCIV GTRSIVNAIW
GGKRVKKLSI