Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_1472 |
Symbol | secD |
ID | 5661869 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 1794684 |
End bp | 1796516 |
Gene Length | 1833 bp |
Protein Length | 610 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641236060 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_001501332 |
Protein GI | 157961298 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.119469 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTGGAAAA ACCTAATGGT GATAATCATT ATCTCCATAG GTGCATTCTA TGCGATACCA AACCTTTTCG GTGAAGACCA CGCAGTTCAA GTGGTAGCCA CACGAGGAGC AGAGGTCTCA GCGTCGACAA TGTCGACAGT AAATGAAGTA TTAAAGAGCA AAGGAATCGC TGTTAAGCGT TCTGAGCTTG AAAATGGTCA GTTGTTAGTA CGTGTAAATA ATGGTGAAGA GCAATTACTT GCTAAAGAAG CGATTAGCGA TGCGTTAGGC GACAAGTACA CCGTAGCACT AAACTTAGCT CCAGCGACTC CAGAGTGGCT TGAGGCCATG GGCGGTTCGC CGATGAAACT AGGTTTGGAC TTACGTGGTG GTGTTCACTT CTTAATGGAA GTGGATATGG GCGAAGCGAT TCGTAAGATG ACCGAAGCCA AGGTTGCAGA CTTCAGAACT GATTTACGAG CTGAGAAAAT TCGCTACGCG GGTATTCGTA ATGGCGCCAA AGGCATCGAG ATTAAGTTTC GCGATGCCGA GACTTTAACG AAAGCTGAAA ACTTTCTTAA GTCTCGCAGC AATGACATGG TCTTCCAAGA CAAGACTGTT GGCGATGACT ATGTCCTTGT TGCTAATCCA AGTGAAGCTT ATTTAAAGCA GATTAAAGAG GAAGCACTAC AGCAAAACAT CACTACACTA CGTAACCGTG TAAACGAGCT AGGTGTGGCT GAACCTGTTG TGCAACGTCA AGGTGCTGAA CGTATTATCG TTGAGCTACC AGGTGTTCAA GATACTGCTC GCGCGAAAGA AATTTTGAGT GCGACAGCAT CGATTGAATT CCATATGGTT GACGAGAAAG CCGATGTTCA AGCTGCAATG AGTGGCCGTG TGCCTGCGGG GTCTGAGCTT TATCAGCGCC GTACCGGTGG TCCAGTTGTC TTGAAAAAAG CGGTTATGTT GACCGGTGAT CATATTCAAG GTGCGCAGCC TAGCTTTGAC GAATATAGCC GTCCGCAAGT CGCAATTAAC CTTGATGCGA AAGGTGGTTC AATTTTCTCT AACGTGACTA AAGACAACAT CGGTAAGCCG ATGGCAACGC TATTTATCGA GTATAAAGAT ACCGGTGAAA AGAATGCTGA CGGTAGCGTT AAGATGAAGA AGATTGAGGA AGTGATTTCG GTTGCTACCA TTCAAGCGCG TCTTGGTCGT AACTTTGTTA TCACAGGTCT TGAGCATGCT GAAGCACAGA ACCTAGCGTT ATTGCTACGT GCTGGTGCGC TAATTGCTCC TGTTTATATC GTTGAAGAAC GTACCATTGG TCCAAGCCTT GGTAAGGAAA ACATCGACAA CGGTATGCAA GCCATGATCT GGGGTATGGC TGTTGTACTT ATCTTCATGT TGGTTTATTA CCGTGGCTTT GGTCTTATTG CTAACTTAGC GCTAACCGCT AACTTAGTGA TGGTTGTGGG CGTAATGTCT ATGATCCCTG GCGCAGTATT AACCCTACCT GGTATTGCTG GTATGGTGTT AACTGTAGGT ATGGCGGTTG ATGGTAACGT ACTGATTTAC GAGCGTATTC GTGAAGAACT TCGTAACGGT CGTAGCGTAC AGCAAGCGAT TCATGAAGGA TACGGTAACG CATTCTCAAC TATCGCCGAT GCGAACATCA CTACCTTTAT GACGGCGCTT ATCTTATTTG CCGTAGGTAC GGGAGCTGTG AAAGGCTTCG CGGTGACCTT AATGATCGGT ATCGCCACTT CTATGTTTAC TTGTATCGTA GGTACACGCT CAATCGTGAA TGCGATATGG GGTGGTAAAC GCGTGAAGAA ACTGTCTATT TAA
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Protein sequence | MWKNLMVIII ISIGAFYAIP NLFGEDHAVQ VVATRGAEVS ASTMSTVNEV LKSKGIAVKR SELENGQLLV RVNNGEEQLL AKEAISDALG DKYTVALNLA PATPEWLEAM GGSPMKLGLD LRGGVHFLME VDMGEAIRKM TEAKVADFRT DLRAEKIRYA GIRNGAKGIE IKFRDAETLT KAENFLKSRS NDMVFQDKTV GDDYVLVANP SEAYLKQIKE EALQQNITTL RNRVNELGVA EPVVQRQGAE RIIVELPGVQ DTARAKEILS ATASIEFHMV DEKADVQAAM SGRVPAGSEL YQRRTGGPVV LKKAVMLTGD HIQGAQPSFD EYSRPQVAIN LDAKGGSIFS NVTKDNIGKP MATLFIEYKD TGEKNADGSV KMKKIEEVIS VATIQARLGR NFVITGLEHA EAQNLALLLR AGALIAPVYI VEERTIGPSL GKENIDNGMQ AMIWGMAVVL IFMLVYYRGF GLIANLALTA NLVMVVGVMS MIPGAVLTLP GIAGMVLTVG MAVDGNVLIY ERIREELRNG RSVQQAIHEG YGNAFSTIAD ANITTFMTAL ILFAVGTGAV KGFAVTLMIG IATSMFTCIV GTRSIVNAIW GGKRVKKLSI
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