Gene Spea_1420 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_1420 
Symbol 
ID5661817 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand+ 
Start bp1725678 
End bp1726247 
Gene Length570 bp 
Protein Length189 aa 
Translation table11 
GC content46% 
IMG OID641235982 
ProductdTDP-4-dehydrorhamnose 3,5-epimerase 
Protein accessionYP_001501280 
Protein GI157961246 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 
TIGRFAM ID[TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGAAAC TCATACCTAC TTCTATTCCT GATGTGTTGC TGTTTGAGCC GCAAGTATTT 
GGTGATGCTC GTGGTTTTTT TATGGAAACC TTTCGTCAAT CAGAGTTTGA GGCGCTGTTT 
GCTGAAGTGG GCATGGTTTG CCCGAGCTTT GTGCAAGAGA ATATGAGTCG TTCGGCTAAA 
AATGTACTAC GTGGGCTGCA TTATCAAACG CTGCAACCGC AAGGTAAATT GATCCGAGTT 
ACTGCAGGTA GCATTTTCGA TGTTGCCGTC GACCTTCGTA AAGGTTCTAA AACCTATGGC 
CAGTGGTTTG GGCAAACCTT ATCTGCTGAA AATAGGCTGC AATTGTATAT TCCTCCGGGG 
TTCGCCCACG GCTTTTTAAC CTTAAGCGAT CATGCTGACA TTATCTATAA ATGCACCGAT 
TACTATGCAC CCGAGCATGA AAGAACCATT GCGTGGAATG ATCCTCAATT AAACATCCAA 
TGGCCGATAG GCGAGGGCGT GAAGCCGATT TTGTCGGAAA AAGATGGGAA AGCTGAGAAG 
GTCCTAGGTT CTAGGGAAAG CAGGTCCTAG
 
Protein sequence
MMKLIPTSIP DVLLFEPQVF GDARGFFMET FRQSEFEALF AEVGMVCPSF VQENMSRSAK 
NVLRGLHYQT LQPQGKLIRV TAGSIFDVAV DLRKGSKTYG QWFGQTLSAE NRLQLYIPPG 
FAHGFLTLSD HADIIYKCTD YYAPEHERTI AWNDPQLNIQ WPIGEGVKPI LSEKDGKAEK 
VLGSRESRS