| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1416 |
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| Symbol | |
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| ID | 5664707 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 1718393 |
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| End bp | 1720336 |
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| Gene Length | 1944 bp |
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| Protein Length | 647 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641235978 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_001501276 |
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| Protein GI | 157961242 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.181862 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACTTTT TGCAGTGCTT GTTTTCATTA AAACGAGTGG AAAAACGAAT AGTTAGCGTA
TTAATTGACT CGTTATTTTT ATTGATAGCG TTTTGGGGAG CAGTTCTTGT CCGTGTTGAT
GATATCAGTA CGCTGACGAA TGGCTCATAT TGGTTACTTA TTGCAAGTGT GGTGCCGCTT
AGTATTCTAG GTTTTGCAAA ACTGGGGCTA TATCGTGCTG TGTTGCGTTA TATGGGGTTG
CAAGCACTGA GCGCTATTTT ATTGGGCGTA GTCGTATCTA CGGTCAGTTT AGTATTGGCC
GCTTATTATT TCGATTCACA ACTTCCTAGA ACCGTACCGG TTATTTACTC TGCATTTGCA
CTGGTTTTTA TTGGTGGCAC GCGTACGATG GTGCGCGCTT TTGTTGGCAC GGGAATGAAG
CGCATCGGTG AGCCAGTGAT TATATATGGT GCAGGAGTGA GTGGTCGCCA ACTGGTAACG
GCGTTAGTAC AAAGCCACGA ATATTATCCG TTTGCCTTTG TCGACGACGA TAAGTCATTG
CATGGCACTG TCATTCAAGG TGTACACGTG CATTCACCAT CGATTATGCG TAAGCTCATA
AGAGAAAAGC AGGCGACCAA GGTGCTGCTA GCACTGCCTA GCGCGTCGCG TTCGCGCCGC
AAAGAGATTT TATTATCATT AGAACAACTC GCTGTGCAGG TACTCACCTT ACCGGCCATG
GCCGATCTAG TTAGTGGTAA TAAGCTTTAT AGTGATATTA AAGAAGTCGA GATTGATGAT
CTTCTCGGTC GCGACAGTGT TAGACCTCGT GATGATTTAA TGACTGCTAA TATCAAAAAT
AAAGTGGTGA TGGTGACAGG CGCGGGTGGG TCTATAGGTT CGGAGTTATG TCGACAGATT
ATTAAGCAAT CGCCAAGGAA ACTGGTGTTA TTTGAGCTGT CTGAGTTTGG ATTATATTCA
ATAGAGCGTG AGCTATCAGC TTTGGCTTCA GGGCTTGGGC TAGATGTTGA AATCTACCCA
ATGTTGGGTT CTGTACAGAG AAAGAACCGT ATAAAGGCTG TTATGGAAGC GTTTGAGGTG
CAAACTGTTT ACCATGCGGC TGCTTATAAA CACGTGCCGT TAGTTGAACA TAACGTAGTA
GAAGGTGTGC GTAACAATGT GTTTGGTACG CTTTATACCG CACAAGCTGC AATAGCGGCA
AAAGTGGAAA CATTTGTACT TATTTCTACT GATAAAGCCG TTCGCCCAAC CAATGTAATG
GGCACGACTA AACGCCTAGC AGAGCTCGCG TTGCAAGCAT TAGCGAACGA ATCGCATTCA
ACACGTTTTT GTATGGTGCG TTTTGGTAAT GTGCTTGGCT CATCGGGTTC TGTAGTGCCA
TTGTTTAGAA AGCAGATTGC AGCTGGCGGT CCTGTTACGG TAACGCATCC TGAGATCACC
CGCTTTTTCA TGACGATCCC GGAAGCGTCT CAATTGGTGA TTCAAGCTGG AGCGATGGGC
AAAGGCGGAG ATGTGTTTGT TTTGGACATG GGCAGTTCAG TTAAAATTGT CGATCTTGCC
GCAAAAATGA TCCGTTTAAG TGGCTTTGAT GTTAAGGATG ATATTAATCC TGAAGGTGAT
ATTAGCATCG AATATAGTGG CCTTCGTCCA GGCGAAAAGC TTTATGAAGA GCTGTTAATT
GGCGATGACG TGACCGGTAC GAATCACGAA CGCATTATGA CTGCCAATGA ATTATGTTTA
CCTTGGCATG AGCTTGAAGT TATCCTTAAG CGACTCGATG CAGCTTGTCA TGAGTTCCAG
CATGAAGCGA TCAGGGAGAT CTTACTGAGT GCTCCTACCG GTTTTAATCC TACTGATGGC
ATATGTGATT TAGTGTGGCA ACAACGTGAA AGTGAGCCTC AGCAGAGTAT TAAAGAGGAA
AATGTGCTTT CTATTGTTTC TTAA
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| Protein sequence | MDFLQCLFSL KRVEKRIVSV LIDSLFLLIA FWGAVLVRVD DISTLTNGSY WLLIASVVPL
SILGFAKLGL YRAVLRYMGL QALSAILLGV VVSTVSLVLA AYYFDSQLPR TVPVIYSAFA
LVFIGGTRTM VRAFVGTGMK RIGEPVIIYG AGVSGRQLVT ALVQSHEYYP FAFVDDDKSL
HGTVIQGVHV HSPSIMRKLI REKQATKVLL ALPSASRSRR KEILLSLEQL AVQVLTLPAM
ADLVSGNKLY SDIKEVEIDD LLGRDSVRPR DDLMTANIKN KVVMVTGAGG SIGSELCRQI
IKQSPRKLVL FELSEFGLYS IERELSALAS GLGLDVEIYP MLGSVQRKNR IKAVMEAFEV
QTVYHAAAYK HVPLVEHNVV EGVRNNVFGT LYTAQAAIAA KVETFVLIST DKAVRPTNVM
GTTKRLAELA LQALANESHS TRFCMVRFGN VLGSSGSVVP LFRKQIAAGG PVTVTHPEIT
RFFMTIPEAS QLVIQAGAMG KGGDVFVLDM GSSVKIVDLA AKMIRLSGFD VKDDINPEGD
ISIEYSGLRP GEKLYEELLI GDDVTGTNHE RIMTANELCL PWHELEVILK RLDAACHEFQ
HEAIREILLS APTGFNPTDG ICDLVWQQRE SEPQQSIKEE NVLSIVS
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