| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1325 |
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| Symbol | |
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| ID | 5661724 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 1620120 |
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| End bp | 1621232 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641235888 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001501187 |
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| Protein GI | 157961153 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.784041 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATATCA AGCGCGTTAT CACTCGTCAA AAGCTGCTCA TAAGCTTGGT AGCAGTTACT
TTTTTGCCTG GATGCCAAGA GTCGCCAGAC GAGCAAACTT CAGCGCCAAG TTACCAATCT
GTTAATGCAG AGTCACTTAG CCTTAAACAA GGGTACCAGT TCAGCCAAGT GTTCTCTGGC
AGTGTTCGAG CCGGTAATAC CACTGGAATT GGCTTTGAGT TAGCGGGGAA GATTAAAGCC
CTCGGCGTCG ATAGTGGTGA CAAGGTTAAA CAAGGCCAGC TACTGGCAAA ACTTGATACC
CGACTATTGA TGGCCGAAAA AAATGAGCTA ACAGCCAGCC TAGCGCAAAA TAAGGCCGAC
TTGGATTTAG CCAAAGCAAC ATTAGATCGC AGCTTAGGCC TACAGAAACA AGGTTATGTA
TCAGAGCAAC AACTCGATGA ACTCAAAGGT CAGTTGAGCA GCTTGCAAGC CGCTAAGACT
CGACTCAATG CCTCATTACT TGCCAATCAG TTAAAAATCG AGAAATCGGA TCTACTGGCT
CCATTCGATG GCGTTATCAG CAAGCGCAGC CATAACTTAG GAGAAGTGAT CAATGTTGGC
AGCCCCGTTT ATACCTTAAT TGAGCACAAC AATGTACAAG CCTATATTGG CGTACCCGTT
GAAATCGCGG CGCAGTTAAA AACCGGGCAA ACCGTTGCTG TAACGGTAAG GCAGCGAGAT
TACCAGGCTA GCATTGCCGG TATTGGCGCC GAGCTCGATC CAGTAACACG AACCGTCGAG
TTGAGATTAA CCCTGCCAAC CAATGCCAAG CTGATAAACG GTGAGCTTAG CTACCTTAAT
TACAATAAAG TGATAGATAC CCAAGGCTAC TGGGTGCCGC TTTCGGCGCT AACCGATGGC
GTACGTGGGC TGTGGAATAT TTACATCATT AGCCCATCGG ATGAGCAACT CTTTAGTATC
GAGCGCCGCG ATGTTGAGAT TGTCTATGCC GCCAAAGATA AAGCCTTTAT CAAGGGAGCT
ATTAGTCCTG ATGAGCAGTA TGTTTCACAG GGATTACATA AACTCGTTGC AGGCCAGCTT
GTGACTCGAC AAGCAAAATT AGCGACGAGG TAG
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| Protein sequence | MNIKRVITRQ KLLISLVAVT FLPGCQESPD EQTSAPSYQS VNAESLSLKQ GYQFSQVFSG
SVRAGNTTGI GFELAGKIKA LGVDSGDKVK QGQLLAKLDT RLLMAEKNEL TASLAQNKAD
LDLAKATLDR SLGLQKQGYV SEQQLDELKG QLSSLQAAKT RLNASLLANQ LKIEKSDLLA
PFDGVISKRS HNLGEVINVG SPVYTLIEHN NVQAYIGVPV EIAAQLKTGQ TVAVTVRQRD
YQASIAGIGA ELDPVTRTVE LRLTLPTNAK LINGELSYLN YNKVIDTQGY WVPLSALTDG
VRGLWNIYII SPSDEQLFSI ERRDVEIVYA AKDKAFIKGA ISPDEQYVSQ GLHKLVAGQL
VTRQAKLATR
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