| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1305 |
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| Symbol | ispG |
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| ID | 5661704 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 1589152 |
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| End bp | 1590267 |
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| Gene Length | 1116 bp |
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| Protein Length | 371 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641235868 |
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| Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
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| Protein accession | YP_001501167 |
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| Protein GI | 157961133 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
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| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.06913 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTATAACG AATCTCCTAT TATCAGACGC AAATCAAGCC GCATTTATGT AGGCAATGTA
CCTATTGGTG ATGGTGCCCC AATCGCGGTA CAGTCAATGA CCAATACTCG TACAACAGAT
GTTGAAGCGA CGGTTGCGCA AATTAAGGCG TTAGAAAATG TTGGTGCAGA CATTGTTCGC
GTTTCAGTGC CAACCATGGA CGCGGCCGAA GCCTTTAAGC TGATCAAACA GCAAACATCA
ATACCTTTAA TCGCCGATAT TCATTTTGAC TACCGTATCG CCCTTAAAGT AGCTGAATAT
GGCGTGGACT GCTTGCGTAT TAATCCAGGT AATATCGGTA ACGAAGAGCG TATTCGTAGC
GTAGTTGAAT GTGCGCGCGA TATGAATATT CCTATTCGTA TCGGTGTGAA CGGCGGTTCA
TTAGAGAAAG ATCTGATGGA TAAATACAAA GAGCCAACAC CAGAAGCTCT ACTTGAGTCA
GCAATGCGTC ACGTAGATAT TCTTGACCGT TTGAACTTCG ATCAGTTTAA GGTCAGTGTT
AAGGCATCGG ACGTGTTCTT AGCGGTAGAG TCATACCGTT TACTGGCTAA GCAAATCGTG
CAGCCATTGC ACCTTGGTAT TACCGAAGCG GGCGGCGCGC GTGCTGGTTC AGTGAAGTCT
GCCGTAGGTC TAGGCATGCT ACTTGCCGAT GGTATAGGTG ACACGCTACG TATTTCATTG
GCGGCCGATC CAGTCGAAGA GATCAAAGTC GGCTTCGACA TCCTAAAGTC GCTACGTATT
CGCTCACGCG GGATTAACTT TATCGCTTGC CCATCGTGTT CGCGCCAAGA GTTTGATGTG
ATCTCAACGG TAAACGAGTT AGAGCAGCGC CTAGAAGATA TCGTGACGCC TATGGATGTA
TCTATCATTG GCTGTGTAGT CAATGGCCCA GGTGAAGCCT TGGTATCAGA TATCGGTCTT
ACTGGTGGTA ACCGCATGAG CGGTTATTAC GACGATGGTG TGCGCCAGAA AGAGCGTTTT
GACAATACCA ATATTGTCGA TTCGTTAGAG GCAAAGATCC GCGCTAAAGC GGCCATTGTT
GCGGGTCGCA TTCCGGCTCA AGATTTAAAT AAGTAA
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| Protein sequence | MYNESPIIRR KSSRIYVGNV PIGDGAPIAV QSMTNTRTTD VEATVAQIKA LENVGADIVR
VSVPTMDAAE AFKLIKQQTS IPLIADIHFD YRIALKVAEY GVDCLRINPG NIGNEERIRS
VVECARDMNI PIRIGVNGGS LEKDLMDKYK EPTPEALLES AMRHVDILDR LNFDQFKVSV
KASDVFLAVE SYRLLAKQIV QPLHLGITEA GGARAGSVKS AVGLGMLLAD GIGDTLRISL
AADPVEEIKV GFDILKSLRI RSRGINFIAC PSCSRQEFDV ISTVNELEQR LEDIVTPMDV
SIIGCVVNGP GEALVSDIGL TGGNRMSGYY DDGVRQKERF DNTNIVDSLE AKIRAKAAIV
AGRIPAQDLN K
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