Gene Spea_1303 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_1303 
Symbol 
ID5661702 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand
Start bp1587365 
End bp1588165 
Gene Length801 bp 
Protein Length266 aa 
Translation table11 
GC content44% 
IMG OID641235866 
Producttype IV pilus biogenesis/stability protein PilW 
Protein accessionYP_001501165 
Protein GI157961131 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3063] Tfp pilus assembly protein PilF 
TIGRFAM ID[TIGR02521] type IV pilus biogenesis/stability protein PilW 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.682058 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGCTTAA AAATGAATCA GAGTAAGCTG GTATTGCCGC TGGTATTAAT CCTGTCGTCA 
GTGATGACAA CAGGGTGTGT TACCCAAGAT ACCTATGCGG GTACCGATAC GCCAGTCTCT
GAAAGAAAAG TGGATAAAGT TGCCGCTGCA CGTCAGCGAA TACAACTTGG TCTGACCTAT
CTACAAAAAG GCAATAGTGA ACAAGCCAAA GCCAACCTCG ATCGAGCATT GGCTTTTGCA
CCCAATTTGG AAGAAGTGCA CATTGCTTTT GCTTATTACT ACCAGTCTGT CGGTGAATTA
GAAAAAACAG AGCAAGCATA CAGAGAAGCG ATCGACTCAA GTGATGCAAC GGGTGATTCA
TACAATAACT TCGGTGCATT TTTGTGTCAG CAAGGTAAAT ATGCTGAGTC TGAGAAGATG
TTTCTAAAAG CTGTTGACCA GCCTCTGTAT ACCCGTTCGG CTTCAACCTA TGAAAACCTC
GGTATTTGTA GCCGTAAAGC CGGACAAATG AGTAAAGCGC AGTCTTATTT TGCGATGGCA
CTAAACTACG ATCCTAGAAG ACGTACCTCA CTAATCGAGC TGACAGAGAT CGATTATGAA
GAGGGCAAAT ATGCCGAGGC GAGAGAACAA CTTTCTCGCT ATCATAGAGT GGCTGCAGAA
TCTGCAGGCA GTTTGGCACT CGGGATTAAA ATTGAACAAG GTTTGAATGA CCAAGAAGCG
GTTAGACGGT TCGGTATCTT ACTACTGGCA AAGTTTCCGC AGTCTGTTCA GGCCAAAGAA
TATCGGGCTA GTATGCATTA A
 
Protein sequence
MGLKMNQSKL VLPLVLILSS VMTTGCVTQD TYAGTDTPVS ERKVDKVAAA RQRIQLGLTY 
LQKGNSEQAK ANLDRALAFA PNLEEVHIAF AYYYQSVGEL EKTEQAYREA IDSSDATGDS
YNNFGAFLCQ QGKYAESEKM FLKAVDQPLY TRSASTYENL GICSRKAGQM SKAQSYFAMA
LNYDPRRRTS LIELTEIDYE EGKYAEAREQ LSRYHRVAAE SAGSLALGIK IEQGLNDQEA
VRRFGILLLA KFPQSVQAKE YRASMH