| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1289 |
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| Symbol | |
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| ID | 5661688 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 1570703 |
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| End bp | 1572490 |
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| Gene Length | 1788 bp |
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| Protein Length | 595 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 641235852 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001501151 |
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| Protein GI | 157961117 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGGACTG TTATATCGAT CTTTTTCTTG CTCACATTGT ATGCATCTTT TCCGTTGTTT
GGCGGGCAAG GTGACTTTGA TGATGTTTTG GTAAAAATAG AAAAAGCGTT GAGGGCATCT
CCTGAACAGG TTGAAAGTTT GATAAATAGA TTATTGGTTT CTTGGGATGA ACTATCTAAA
GAGCAGCAAA TTAAATTAAT CGTTTATCAG GCTATAAGGA AAAGCTACAA CGGCGAATAT
CGGTCCTCTC AAAATTTTTT GGAGCGTGTA AAAGAGTATA GAGTTAGATC TGATTTGTTA
GATGATGTAT ATCACTATCA AGCGGTTAAT TTAATAGGTT TGAGGCAATA TACTGATGCA
TTCCCATTAA TGGAACGTTA TCTTAAATCG GTAGAAAATA TTGGCGATAA TAATGTAAAA
GCTAAGGCCT ATATGAGGAT GGCTAACTTA GCATTAAATC TAGAAGCGTA TGAGGACCTT
CGGAATTATG GTGAAAAGGC GTTAAGTCTG AGCCAAAGTT CTGATAAAAA AGTTTATTGT
TTTTCTCTTA TATTGATTGC GTTTGCAGAT CTTAAGGAAT ATGAACTTAA AGAAGCGGAA
AGAGGCTTTA AGAGTAGTAA ATTATTTTGT GATCAAAATG AACTTCCTTT ATTCGGTTTC
ATGTCTGGAA AAGGTTTGGC TGAAATAGCC ATGAAAATGG ATGATTTTGA AAGCGCCGAA
ATGCAACTTA ATGAGGTCCT TGCCGGATAC ATTAAGTATG GCTATAAAGC GGAAATAATA
AGTGTTCATG CTTTGCTTGC CAAGACGAAC CTGCGACTCA AGAAGTATTC TCAAGCTGAA
GAGTTTGCTA ATAAGGTGAT GGGGTTAAGT GATGAGCCCA GTCATACTGA ATATAAAGCT
ATTGCCAGCA AAGTACTGTC GCAGAGATAC TTAGAGTCAA AGCAGTACAA ACTTGCCCAT
GATTACCTCG AATCCCATCA ACACTATAGT AATTTAATCT TCGATGACAC TAAAGCTAAG
GCTAATGCCT ATCAGATGGC TAAGTTTAAA CACCAAGAAC AGGCGCGCGA AATAGCCTTG
CTCAATCAGG AGCGGCAATT GGTGGAAACT CAGAAAGAGT TAGACCGTTC CGACCGGACT
AATAATGTCA TGATAATGAC CATGTTGGCG GGCAGTGTGA TTTTCTTGTC GCTATTTTTG
CTATACAGCC ACAGACAAAA GGTGCGTTAC CGTAGGCTGG CATTAACTGA TAGGTTAACC
AGTGTTTATA ATCGCGGTGC CGGGCAGGAT TTTGCCGAAA ATGAGTTCGT ACAGGTCAGC
ATGCGAAAAG CTGATTACGC TGTGATAGTG TTTGATTTAG ATCTGTTTAA AAACATCAAT
GATAGTTTTG GTCATGCAAC CGGTGACTGG ACGTTAAAAC ATGTGGTGTC GGTGATTAGG
CCGCTTATCC GCGATAGCGA TATTTTTACT CGAATGGGAG GTGAAGAGTT TGCATTATTC
TTACCTTATT CTAGCGAGCA GACCGCACTT AAAATAGCCG AGCGCTGTAA ACTGGCGGTA
GCTGCAATCG ATACCAAGTA TTCTGGCCAT GTGTTTAACA TTAGTGCTAG CTTTGGCGTA
TCGTGTAGCA CTAGTGAAGA TCTCAGTTTA GATCCGTTAT TAAAGCGTGC CGATATCGCG
CTCTATGCTT CGAAGCACTC GGGCCGTAAT AGAGTGACGT TATACACACC TGAGCTTAAG
CTACAGCGCC CGACCGATGA GACTCAGCGT TCACTGGTGT TTAATTAG
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| Protein sequence | MRTVISIFFL LTLYASFPLF GGQGDFDDVL VKIEKALRAS PEQVESLINR LLVSWDELSK
EQQIKLIVYQ AIRKSYNGEY RSSQNFLERV KEYRVRSDLL DDVYHYQAVN LIGLRQYTDA
FPLMERYLKS VENIGDNNVK AKAYMRMANL ALNLEAYEDL RNYGEKALSL SQSSDKKVYC
FSLILIAFAD LKEYELKEAE RGFKSSKLFC DQNELPLFGF MSGKGLAEIA MKMDDFESAE
MQLNEVLAGY IKYGYKAEII SVHALLAKTN LRLKKYSQAE EFANKVMGLS DEPSHTEYKA
IASKVLSQRY LESKQYKLAH DYLESHQHYS NLIFDDTKAK ANAYQMAKFK HQEQAREIAL
LNQERQLVET QKELDRSDRT NNVMIMTMLA GSVIFLSLFL LYSHRQKVRY RRLALTDRLT
SVYNRGAGQD FAENEFVQVS MRKADYAVIV FDLDLFKNIN DSFGHATGDW TLKHVVSVIR
PLIRDSDIFT RMGGEEFALF LPYSSEQTAL KIAERCKLAV AAIDTKYSGH VFNISASFGV
SCSTSEDLSL DPLLKRADIA LYASKHSGRN RVTLYTPELK LQRPTDETQR SLVFN
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